Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1264 ATGGAAGTGAAAGGAAGGGTAAGCAACTCAACAGGCACCATAGTCCAAAGTGAAGACGAGATAGATCTTCGAAGAGGTCCTTGGACCGTCGATGAAGATCTTGCTCTCATCAATTACATTGCCAATCACGGAGAAGGTCGATGGAATTCCCTTGCACGTTCAGCTGGACTCAAACGAACTGGCAAGAGTTGCAGATTGAGATGGTTGAATTATCTTCGTCCTGATGTTCGTCGTGGCAACATCACTCTTGAAGAACAGCTTCTCATTCTCGAGCTCCATGGTCGCTGGGGAAACCGGTGGTCTAAAATTGCTCAATATTTGCCTGGAAGAACTGATAACGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAGCACGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCGAGGCTGGTGGAACGCATTCAAGCCGCCGCCGCCACCGCCACCGCCGGTTCTCCCACGGCTTCTGCCAGTGCTACTACAACCATCACCAACAACAATAATACAACATACAACTACAACAACAACCTTAACAACAGTTTTGAGGTGCACAGTGGGAACATGATGTTGAGTCCAGCAATTATGAACAACAACTTCGGTGGTTCACAAAGTTACACTCCAGAAAACAGTAGCACTGGTGCATCATCTGATTCGTTTGGGACTCAGGTTTCACCTGTGTCGGAGTTGACTCAGGATTACTACAATAATGTTACGGTTGTTAACAGTAACAATAACAATAACCCTAATCCTGATTACTACCCACAAGTACAAGATCAACTCAGCTTTTTGGATTGCATCACAAGCCCATCCGGGTTGTTCTCTCAGCAGCTGGATTTCCAATCCATGGAACCAAACACCCCGTGGATTCAGAGTAATGGGGACACATACAACGGTTTCTGGAACGTTGAAAACATGTTATTGTTCCAACAACTCACTGACAACATGTGA 990 0.4556 MEVKGRVSNSTGTIVQSEDEIDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAATATAGSPTASASATTTITNNNNTTYNYNNNLNNSFEVHSGNMMLSPAIMNNNFGGSQSYTPENSSTGASSDSFGTQVSPVSELTQDYYNNVTVVNSNNNNNPNPDYYPQVQDQLSFLDCITSPSGLFSQQLDFQSMEPNTPWIQSNGDTYNGFWNVENMLLFQQLTDNM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1264 329 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Pvu6g1264 329 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pvu6g1264 329 Gene3D - 22 78 - -
Pvu6g1264 329 Coils Coil 325 329 - -
Pvu6g1264 329 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pvu6g1264 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 326 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu6g1264 329 PANTHER MYB TRANSCRIPTION FACTOR 2 326 - -
Pvu6g1264 329 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pvu6g1264 329 CDD SANT 27 72 IPR001005 -
Pvu6g1264 329 Gene3D - 82 145 - -
Pvu6g1264 329 SMART sant 77 125 IPR001005 -
Pvu6g1264 329 SMART sant 24 74 IPR001005 -
Pvu6g1264 329 MobiDBLite consensus disorder prediction 215 236 - -
Pvu6g1264 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Pvu6g1264 329 MobiDBLite consensus disorder prediction 162 181 - -
Pvu6g1264 329 CDD SANT 93 121 IPR001005 -
Pvu6g1264 329 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pvu6g1264 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1264 Pvu-Chr6 23608700 23610978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1264 18 316 MYB Transcription Factor Family AT3G06490 52.866 9.80e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g1264 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1264 K09422 - gmx:100305347 504.212