Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1246 ATGGCGGAGGAGAAAAGAGAGGAAGAACCGCACCCGAACAGCGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTTCCAACCACCGACCATCTTCGACGTCATGCCGCCGCCGTCCTTGTCTTCTTCCTGCGACCACAAGGCCTCGCCCTTCGGCTTCTTGGAACTGCTCGGCGTCCACGACTACAACGCGCCGCTGTTCGATTGGCTCCCCGCGGCTGCGCCGTCTCGGGTTGGCTCCAAAGTGCCGGACTTCTCCGAGGTGCTGAACACTCCCGCGTCGCCGAACTTGTCGTCGATTTCGTCGTCTTCTAATGAGGCCACCACCACCGCCACCACCACCACCGCGGAGCAGAGTGGTAAAGGTGGGATTGAACACGAGGAAGGTGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGATGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCGCCGGTTGCGGCGTAAAGAAGCGAGTGGAGCGTTCCTCCGATGACCCTTCCATCGTGGTTACCACCTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCTGGCTTCGGGTTCGTGAACGAGCCTGGTGGATTGGGACATTCCGGCACCTTCGGTTCCTCACACTTCGTGCTGCCACATCAGCACCAACACCAACCACAAGCTTCGGCTTTGGTATATAACTCCAACCCACTTTTTGTTAACTCCGGTAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCAGGACCACGCGAACCGTCGAGGTTTCGGACACGAGGCTTTGTCGAGAGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA 1056 0.5521 MAEEKREEEPHPNSEPSTTMAFSDEIPNNFTFPFQPPTIFDVMPPPSLSSSCDHKASPFGFLELLGVHDYNAPLFDWLPAAAPSRVGSKVPDFSEVLNTPASPNLSSISSSSNEATTTATTTTAEQSGKGGIEHEEGEAEEEEEGGNGGRDDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRAGFGFVNEPGGLGHSGTFGSSHFVLPHQHQHQPQASALVYNSNPLFVNSGSNFMNTTSFGGFGQDHANRRGFGHEALSRDNGLLQDIIVPSQVRKEEKD* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1246 351 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 81 342 - -
Pvu6g1246 351 Gene3D WRKY domain 172 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1246 351 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1246 351 MobiDBLite consensus disorder prediction 101 178 - -
Pvu6g1246 351 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 342 IPR044810 GO:0003700
Pvu6g1246 351 MobiDBLite consensus disorder prediction 101 128 - -
Pvu6g1246 351 SUPERFAMILY WRKY DNA-binding domain 180 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1246 351 MobiDBLite consensus disorder prediction 1 27 - -
Pvu6g1246 351 ProSiteProfiles WRKY domain profile. 183 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1246 351 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1246 Pvu-Chr6 23452021 23455089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1246 158 348 WRKY Transcription Factor Family AT5G49520 58.049 1.07e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu6g1246 WRKY 3.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1246 - - gmx:100812252 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1246 6 23452021 23455089 Pvu6g1246 6 23452021 23455089 ECH
Pvu6g1246 6 23452021 23455089 Pvu3g1206 3 29019242 29021426 PCT