Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1244 ATGTTCTCCTCTCTCATGGCCAACCCAACCGATCGCTCACGTGACTCCCACCGCGTAAAGAAGAAGAAGAAATCCCCCGCCAAGCCACATCCCCACCAAGACCACTCCCACGCCAGATGGAAAACCCACGCGCAGCAGAACCTATATTCCTCCAAGCTCCACCAGGCCCTCGCGCGTGTCAACATCTCCGCCGACGCGCCCCGCCGTGGCAGGGCAGTCCACGAGGCCGCCGACAGAGTCCTCGCCGCCGCCGCCCGCGGCAGGACGCGCTGGAGCCGCGCCATCCTCACCAACCGCCTCAAGCTCAAGTTCAGGAAGACACCGCACAAGCGACACAAGGTGGTTGGCCCGCCCCGCCCCAAGAAGCCCCGCTTCAGCGTCCTCCGCCTCAAGGGAAAAACCCTTCCCGCGGTTCAGCGCAAAGTTAGAGTCCTCGGCCGGTTGGTTCCCGGTTGCAGGAAAGAACCGCTTCCGATCATTCTCGAAGAAGCCATCGATTACATACCTGCGCTCGAGATGCAGGTTCGCGCCATGGCGGATCTCGCTCAGTTACTCCTCGGCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGTATCCTCCTCCGCGCCGCCGAGTTGA 627 0.6348 MFSSLMANPTDRSRDSHRVKKKKKSPAKPHPHQDHSHARWKTHAQQNLYSSKLHQALARVNISADAPRRGRAVHEAADRVLAAAARGRTRWSRAILTNRLKLKFRKTPHKRHKVVGPPRPKKPRFSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPIILEEAIDYIPALEMQVRAMADLAQLLLGSSSSSSSSSSAAAVSSSAPPS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1244 208 MobiDBLite consensus disorder prediction 16 37 - -
Pvu6g1244 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 187 IPR036638 GO:0046983
Pvu6g1244 208 MobiDBLite consensus disorder prediction 1 41 - -
Pvu6g1244 208 CDD bHLH_AtIBH1_like 127 178 IPR044549 GO:0006355
Pvu6g1244 208 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 9 203 - -
Pvu6g1244 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 9 203 IPR044660 GO:0006355
Pvu6g1244 208 MobiDBLite consensus disorder prediction 188 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1244 Pvu-Chr6 23403993 23405163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1244 37 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.689 2.15e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1244 - - gmx:100792237 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1244 6 23403993 23405163 Pvu6g1244 6 23403993 23405163 ECH
Pvu3g1205 3 28958078 28959067 Pvu6g1244 6 23403993 23405163 PCT