Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1241 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAGCCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTTCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGTGTCTACGACGGCCACGGCGGCCCTGATTGTTCGCGATATGTTTGCGACAACTTGTTCCGTAATCTCCAAGCGATATTGGCCGAGTCACAGAGTGTTGTGACATCTGAGGCCATTCAACAGGCGTTCCGGCGGACTGAGGAGGGGTTCACAGCGCTTGTTACGGAGTTGTGGAACTCCCGGCCGCAAATTGCGACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTTTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTCGGCAACACTGGTGGGATGGCTGCGATTCAGCTGTCCACGGAGCACAATGCGAATATTGAGGCTGTTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTCAGACATGGAGTATGGAGAGTTAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGTGGGTAGTGCGAAGAAACTTATCAAGGCTGCCCTACAAGAAGCGGCAAGAAAACGTGAGATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGATGTGCGCTCGATCACTGA 1110 0.5072 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESQSVVTSEAIQQAFRRTEEGFTALVTELWNSRPQIATTGTCCLVGVICRQTLFLASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAVRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRVGSAKKLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRCALDH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1241 369 CDD PP2Cc 46 346 IPR001932 -
Pvu6g1241 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Pvu6g1241 369 Pfam Protein phosphatase 2C 70 315 IPR001932 -
Pvu6g1241 369 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 369 - -
Pvu6g1241 369 Gene3D - 39 354 IPR036457 -
Pvu6g1241 369 SMART PP2C_4 39 344 IPR001932 -
Pvu6g1241 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Pvu6g1241 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Pvu6g1241 369 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1241 Pvu-Chr6 23371218 23379132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1241 1 366 PP2C-type Phosphatase Gene Family AT4G38520 59.367 2.39e-158 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1241 K01102 - gmx:100813333 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1241 6 23371218 23379132 Pvu6g1241 6 23371218 23379132 ECH
Pvu3g1198 3 28862947 28867151 Pvu6g1241 6 23371218 23379132 PCT