Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1238 ATGGGAACCCCAGAACAAGAAGAAGAAGAAGAAGAGAAGCTTCTCAAAAAGATAGAACTTCTCGAAGAGGGTCACGCTCACCTCAAGCAAGAAATGTCCAACTTCCAGCTGCTTCAAAACCACAGGTCTCATTCTAGGTTTGGTGCTGCTACGTCTAACCAACCCTCTTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCACTCTGTTCATGTTTTGGATCTTCAATGTCGTGTCATGTACTGGAACCCTAGTGCTGAAAATCTGTATGGCTATGCGGCAGAAGAGGTTCTTGGGAGGGATGGGATTGAGATGCTGGTGGATCCCAGGGATTTTGGTTTGGCCAATGATGTGTTCAACCATGTCAAAATGGGAGAGAGTTGGAGAGGCCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCCGTGGCAACCAATACACCTTTCTATGATGATGATGGAACCATGGTTGGGTTTATTTGCGTCTCCTGTGATTCACGGCCCTTTGTTGAATCCAGAATTCCCTTTCTAGGAGCAGAGAGTGCAGAATCTGTATCGGGTTCCAATGGTCGTAGGAGTAGCATTTCAGATAAACTTGGCATTGACTCTCAGCAGCCACTCCAAGTTGCTCTGGCTTCGAAAATTTCAAATTTGGCTTCAAAGATGAGTAACAAAGTTAAGTCCAGAATCCGAACAGGAGAAAATAGTGTCAATCGTGAAGGTGGGAGTGGAGAAAGTCGTCATTCCGAGCATAGTTTGTTGGAATGTGCTGTTTCTGACCCGAGAGAAGATGGTAATTCCAGTGGGGCTAGCACTCCCAGAGGAGATGTGCAAAAATCTCCTTTTGGTGCCTTTTCTCATGCTGAAGAGAAATCCCAAGGGAGAACTATGAGAGACTCCGATGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATTCAAAAGAAAACATTGTCATGGCCTTGGAGAGCAAGTGATCAGGAAGGATCTGAGGCAAGGAATGTTCATGTTGCTTCCCCTTGGTTGCAGGGTGACCAAGAGAATGAGTCGGTTAATCAGAATAATCTTTCTTCTGGGTTGAAGCGAGAAAGCCAGGCAGGCGAAAGCAATGGACCTGTTACTAACGAGGCTTCAGGATCCTGGTTCTCGTTTGTTAATGTTAACAGCACAAGTAGTACCAGCAGCTGTGGCAGTGGCAGTAGTTGTGCTGCCAATAATAAAGTGGATGTTGACTCCGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAGTTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATATGCTACAGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAATATTATTCTCTTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATTGTAACAGAGTTTCTCCCACGGGGAAGCTTATTTCGATTGCTTCAGAGAAACACATCCAAACTAGAGTGGAGACGGAGAGTTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTCCATCATTGCAACCCCCCTATCATTCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGACTTTCCCGTCTTAAACATGAAACATATCTCACTACTAAGACAGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCAGACGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTTACAACTGAAAAGATCCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGACTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTGTATAATTGAGAGCTGCTGGCACAGTGATCCAGTTTGCCGACCAACATTCCAGGAACTGGTGGAAAGGCTTAGAGAACTGCATAGACAGTATGCAATTCAATTCCAGGCAGCTCGATCTGCCGAGGAAGGCACTCAAAAGGAGTTCTCTAGCAAATAG 2169 0.4403 MGTPEQEEEEEEKLLKKIELLEEGHAHLKQEMSNFQLLQNHRSHSRFGAATSNQPSSSSLHQNGNKYLNILQSMGHSVHVLDLQCRVMYWNPSAENLYGYAAEEVLGRDGIEMLVDPRDFGLANDVFNHVKMGESWRGQFPVKNKKGDRFYAVATNTPFYDDDGTMVGFICVSCDSRPFVESRIPFLGAESAESVSGSNGRRSSISDKLGIDSQQPLQVALASKISNLASKMSNKVKSRIRTGENSVNREGGSGESRHSEHSLLECAVSDPREDGNSSGASTPRGDVQKSPFGAFSHAEEKSQGRTMRDSDDQSEGKPIHKIITSKAETWIQKKTLSWPWRASDQEGSEARNVHVASPWLQGDQENESVNQNNLSSGLKRESQAGESNGPVTNEASGSWFSFVNVNSTSSTSSCGSGSSCAANNKVDVDSDCLDYEILWEDLTVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDMLQSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLEWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWACIIESCWHSDPVCRPTFQELVERLRELHRQYAIQFQAARSAEEGTQKEFSSK* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1238 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Pvu6g1238 722 Gene3D Phosphorylase Kinase; domain 1 435 519 - -
Pvu6g1238 722 SUPERFAMILY PYP-like sensor domain (PAS domain) 60 175 IPR035965 -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 359 393 - -
Pvu6g1238 722 Coils Coil 11 31 - -
Pvu6g1238 722 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 52 713 - -
Pvu6g1238 722 ProSiteProfiles Protein kinase domain profile. 442 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1238 722 Pfam PAS fold 67 172 IPR013767 GO:0006355
Pvu6g1238 722 SUPERFAMILY Protein kinase-like (PK-like) 432 694 IPR011009 -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 358 393 - -
Pvu6g1238 722 SMART serkin_6 442 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1238 722 Gene3D Transferase(Phosphotransferase) domain 1 520 722 - -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 251 268 - -
Pvu6g1238 722 PRINTS Tyrosine kinase catalytic domain signature 516 529 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 PRINTS Tyrosine kinase catalytic domain signature 555 573 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 PRINTS Tyrosine kinase catalytic domain signature 602 612 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 PRINTS Tyrosine kinase catalytic domain signature 621 643 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 PRINTS Tyrosine kinase catalytic domain signature 665 687 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 TIGRFAM sensory_box: PAS domain S-box protein 66 172 IPR000014 -
Pvu6g1238 722 Pfam Protein tyrosine and serine/threonine kinase 442 694 IPR001245 GO:0004672|GO:0006468
Pvu6g1238 722 CDD STKc_MAP3K-like 448 694 - -
Pvu6g1238 722 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 713 - -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 301 322 - -
Pvu6g1238 722 Gene3D PAS domain 76 177 - -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 234 250 - -
Pvu6g1238 722 CDD PAS 78 175 IPR000014 -
Pvu6g1238 722 SMART pas_2 65 132 IPR000014 -
Pvu6g1238 722 ProSiteProfiles PAS repeat profile. 63 134 IPR000014 -
Pvu6g1238 722 MobiDBLite consensus disorder prediction 234 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1238 Pvu-Chr6 23326665 23332251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1238 7 711 MAP Kinase Kinase Kinase AT3G06620 57.274 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pvu6g1238 PK_Tyr_Ser-Thr 5.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1238 - - gmx:100815858 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1187 3 28604828 28612300 Pvu6g1238 6 23326665 23332251 PCT