Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1216 ATGTTGGGCATAAGCTTTAAACAGCTTCCGCAGACGAAGTGTGAGGGTGAGCAGGAGGTGAAGGATGTGGTGATGCTGAGAAAGGAGATACCAAAAGGATGCATGAAAATAAAGGTGGGTGGTGAAGGCGAAGAGCAGCAGAAAATAACGGTGCCGGTCAATTACCTCAAACACCCACTCTTTGTTCAGCTTCTGAAGGAGGCGGAGGAAGAATATGGGTTTGCACACAAGGGGAACCATAACTATCCCTTGTCAACTCGCCCAGTTCAAGCACGTTCAGCACTTGATCGATGCCGACACCTCCCTCCTCCATCACCACCATCTTCACCTCGTTCCCTGCTTCAGGGCTTAATTCATCTCACCAACCAACCCTTTTATAACCATTTCTATGGCAACTTAGGTTGTGTAAATTCCTATATATACATACATATCCCGATTTTGGCTGTTGTACAATTCCTGTATATGAGTTTTTGA 474 0.4578 MLGISFKQLPQTKCEGEQEVKDVVMLRKEIPKGCMKIKVGGEGEEQQKITVPVNYLKHPLFVQLLKEAEEEYGFAHKGNHNYPLSTRPVQARSALDRCRHLPPPSPPSSPRSLLQGLIHLTNQPFYNHFYGNLGCVNSYIYIHIPILAVVQFLYMSF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1216 157 Pfam Auxin responsive protein 28 79 IPR003676 GO:0009733
Pvu6g1216 157 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 27 83 - -
Pvu6g1216 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 83 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1216 Pvu-Chr6 23131513 23132449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1216 29 83 Calmodulin-binding Proteins AT3G43120 43.636 2.16e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1216 - K14488 pvu:PHAVU_006G116100g 313.538