Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1215 ATGTCAGATCTTATGGAATATTCTCATTCATCGAATGCAGGCACGAGGAAGAAGAGGAGCAAGAACAAAAAAAGGTTCAGCGATGGACAAGTGAAGTCATTGGAATCCATGTTTGAGACAGACTCGAGACTGGAACCAGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCCAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTAAAGCAGATTCAGCGAGACTACACCATACTTCGAGCCAATTATAAGACTTTGGATTCACAGTTTCATGCTCTCAACAAAGACTATCAATCAATGTTAATACAGTTGCAGAATATGAAAAATCGATTACAAAAGCCCCTAGAACAAACTGAGAGTTGTAGCACAGGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGGGAAATGGAGAGGCCATCAAAAGAGAACAGGAGATAAAGCAGCCAAGCTCGACAACAGGAAGATCAGAAGACATTGTTTGTGGTGGTATCTCGGAATGTGACAGCAGCATAAAGGCAAAACAAAACTTTGGTGTGGAAGATGAACCTTCCCTTCTGAACTTTGTTGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGTTAGAATCAGAGGATATATTAGGCCAATTAAGCAGCTGTGATTATCAATGGTGGGACTTCTGGTCCTGA 705 0.4227 MSDLMEYSHSSNAGTRKKRSKNKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQRDYTILRANYKTLDSQFHALNKDYQSMLIQLQNMKNRLQKPLEQTESCSTGYKAANSMESEAGNGEAIKREQEIKQPSSTTGRSEDIVCGGISECDSSIKAKQNFGVEDEPSLLNFVENTDGSLTTSEHWGLLESEDILGQLSSCDYQWWDFWS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1215 234 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Pvu6g1215 234 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Pvu6g1215 234 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Pvu6g1215 234 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Pvu6g1215 234 CDD homeodomain 26 78 IPR001356 GO:0003677
Pvu6g1215 234 Coils Coil 76 96 - -
Pvu6g1215 234 MobiDBLite consensus disorder prediction 1 38 - -
Pvu6g1215 234 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Pvu6g1215 234 MobiDBLite consensus disorder prediction 139 165 - -
Pvu6g1215 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 234 IPR045224 GO:0003700
Pvu6g1215 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 11 234 - -
Pvu6g1215 234 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Pvu6g1215 234 Gene3D - 12 84 - -
Pvu6g1215 234 SMART HOX_1 19 81 IPR001356 GO:0003677
Pvu6g1215 234 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1215 Pvu-Chr6 23120454 23121800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1215 22 234 Homeobox Transcription Factor Family AT2G46680 43.043 3.24e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu6g1215 Homeodomain 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1215 K09338 - gmx:100806279 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1215 6 23120454 23121800 Pvu10g1222 10 38454753 38456097 PCT