Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1203 ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCATTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCTTCTTAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCTGATATAAAGAGAGGAAACATAAGTCCAGAAGAAGATGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCAGGAAGATTACCAGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGTAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACTGTACCGCCAGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGAATGAGACTAAGAAAGGGAGCTCAGAGAAAACCTTAGTTTATCTACCAAAAGCCGTAAGGGTTAAGGCTCTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCAGGTAGTGCATCAACGAGCCAGGAGAAAGTTCAGAGCCCCGAAGAAGAAGCAAGAGAGGTAAACATGGTTTGGGGGGTAGGCAGCGATGGAGACAATGGCGAGGTTGGAATATTCTTTGGTGAAGACCATGACCTGGTCTACAGCTCCTCTTACGTGGAATCTCATTCTGATAATGTTCACACTGATCATGGTACGCTTGAAAAGCTCTATGAAGAGTACCTGCAGCTCTTGAAGGATGAAGAGAAACCTGCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAG 846 0.4374 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTVPPEKKKGKKKNKQKNETKKGSSEKTLVYLPKAVRVKALSCVPRTESTFTLDSNSGSASTSQEKVQSPEEEAREVNMVWGVGSDGDNGEVGIFFGEDHDLVYSSSYVESHSDNVHTDHGTLEKLYEEYLQLLKDEEKPADELDSFAQSLLV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1203 281 Gene3D - 14 66 - -
Pvu6g1203 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu6g1203 281 MobiDBLite consensus disorder prediction 177 201 - -
Pvu6g1203 281 CDD SANT 16 61 IPR001005 -
Pvu6g1203 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu6g1203 281 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu6g1203 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu6g1203 281 PANTHER MYB TRANSCRIPTION FACTOR 1 266 - -
Pvu6g1203 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 266 - -
Pvu6g1203 281 CDD SANT 71 112 IPR001005 -
Pvu6g1203 281 MobiDBLite consensus disorder prediction 115 154 - -
Pvu6g1203 281 MobiDBLite consensus disorder prediction 177 195 - -
Pvu6g1203 281 MobiDBLite consensus disorder prediction 130 146 - -
Pvu6g1203 281 Gene3D - 71 156 - -
Pvu6g1203 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu6g1203 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu6g1203 281 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu6g1203 281 SMART sant 13 63 IPR001005 -
Pvu6g1203 281 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1203 Pvu-Chr6 23032617 23034238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1203 4 141 MYB Transcription Factor Family AT3G13540 67.133 2.48e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g1203 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1203 K09422 - gmx:778044 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1203 6 23032617 23034238 Pvu10g1204 10 38186999 38188192 PCT