Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1202 ATGGGTTTCCGTGCTGATGAGGCAAAGCCGAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCAACGAGGTTGAGAATTTTGCTGTAGTGCATAGAGTGTTCGGTGCTAGCAACGTTGTCAGAATGATTCAGATGGTTGAGGAAACAAAGAGAGAGGATGCAGTTAAATCCATGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGATCTATTTACGAGTTACAAAAGATGATTGAGGAAGTGAAGGCACAGCTGGATTCGATAAAAACGCGGGTGTCAGAGATGCAAGAACAAAAGGAGCAGTTGTTGAGTATTAGTGGCAATTACAATCCTTTATTTGGCGTCAATGACCCTATGTTTGATTCTCCTATGGCCTCAGATCCATTTGAATTTCCTTTGGAAGGTGGTTGGGTATACACCAATATCCCAGCACCCTCCTGCTAG 516 0.4535 MGFRADEAKPSMQHQPCAACRMLRRRCDSKCVLAPYFPTNEVENFAVVHRVFGASNVVRMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGSIYELQKMIEEVKAQLDSIKTRVSEMQEQKEQLLSISGNYNPLFGVNDPMFDSPMASDPFEFPLEGGWVYTNIPAPSC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1202 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Pvu6g1202 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
Pvu6g1202 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Pvu6g1202 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 8 134 - -
Pvu6g1202 171 Coils Coil 95 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1202 Pvu-Chr6 23022415 23023396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1202 16 132 AS2 family AT2G28500 54.701 2.61e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu6g1202 LOB 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1202 - - vra:106754025 260.381