Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1198 ATGGCACATCTGGAAGCTGCTGTCAGAAGTGTGCCCAGTTCTCAGCCAGAAACAGGTGTGGAAGACGGTGATCTGTACACGCAGCTATGGAAGCTATGTGCGGGGCCTTTGGTGGATGTTCCTTGCGAAGGGGAGAGAGTTTTCTACTTTCCGCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACTGAACCAGGAGCTGAACCAGCAAATTCCTCATTTCAATCTCCCGTCCAAGATTCTCTGTCGTGTTGTTCACATTCAGTTGTTGGCGGAACAAGAAACAGATGAAGTTTATGCTCGTATCACTTTGCTTCCGGAGTCAAATCAAGAAGAGCCAACGACTCCAGACCCAAGTGTACCCGAGACCCAGAAACAGAGTTTTCACTCTTTCAGTAAGATATTAACTGCTTCTGATACTAGTACTCATGGAGGATTTTCAGTTCTGCGGAGGCATGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTATCCCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTCACAACTGGCTGGAGTACATTTGTCACATCCAAGAGACTTGTTGCTGGAGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGCGAACTGAGAGTTGGTGTTAGGCGTGTAGCACGACAGCAAAGTCCCATGCCTTCTTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACCAGTACCATGTTTGTGGTATATTACAAACCTAGGACTAGCCAGTTTATTATAGGACTAAACAAATATCTGGAGTCAGTCAACAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGCGGAACTCTCAGTGGCGTTCATTGAAGGCTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTCGTTGCTTCCACTGCTTTGAATGTCACTCAACAAGTGGTCAAGAGCAAAAGGTCCAGGCCACCTGAGGTTTCGTCTTCTGAAATTGGCCCCAATTCCCCTGCTACGGCTTTGTGGTATCATGGACCATCCTTATCCCATGACCCTACTGCATTGGGTGGCACTTCAGAGGTCCAAAGCAATGAAAGCCCAGTTATATGGTCTACAAGGATGAAAGAAATTAATGTGAATCCTATGAATGGTAACAAGAGCAGCTCCAGCAGAGTCCGTGTGGAAGGAATGTGGCCTTCTTCCCCACATTTGAGTGTCTCTTCCAACCTTTTTCCAGACCCCAAAAACAGCAAAGCTGTCACAGCACAATCAAATGTCTCTGGGTATGCCCCTGTTTCATGTAGGCCGAATGATGATTTGGCACATGATCCCGTGGAATGTGGTAAAAGAAGTGAGAATCCCATGGACTGTTGGGTATTTGGAGTTAATTTGACTAACAATTTTACTAATGTTGCCCTCCCGGATAAAGAACTGGGATGTCCAGCTATAATAATTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTCAGGCTGGTCAGAATCACAATTATTCACTGTCCAATAAGGTGCAGAAGCAAATTATTTCTGATGGATCACCCAGTGAGAGACACGCCAAGCAGGCCACAGTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAGTTGACCTCACTGTCATAAAAGATTATGAGGCTCTCATAGACGAGCTTGAGAAAATTTTTGATATTAAGGGGGAGCTTCGAATGCAAACCAAATGGGCTATTACTTTCACTGATGATGAAAATGACATGATGCTCGCTGGTGATGATCCATGGCCTGAGTTCTGTTGTATGGCGAAGAGGATTTTCATTTGTTCAAGGGAAGATGTGAACAAGTTGAAAAACAAGCATTCGGCGTGTTCATCAGAGGCTGAGGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGAAGAAACTCAGCAAGTCTCTTGTGATTTGACAGCTTAA 2154 0.4578 MAHLEAAVRSVPSSQPETGVEDGDLYTQLWKLCAGPLVDVPCEGERVFYFPQGHMEQLQASTNQGLNQELNQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLLPESNQEEPTTPDPSVPETQKQSFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRVARQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLESVNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWRNSQWRSLKAQWDEPAIIPRPERVSSWEIEPFVASTALNVTQQVVKSKRSRPPEVSSSEIGPNSPATALWYHGPSLSHDPTALGGTSEVQSNESPVIWSTRMKEINVNPMNGNKSSSSRVRVEGMWPSSPHLSVSSNLFPDPKNSKAVTAQSNVSGYAPVSCRPNDDLAHDPVECGKRSENPMDCWVFGVNLTNNFTNVALPDKELGCPAIIIPSGPKDSIPVAACETQAGQNHNYSLSNKVQKQIISDGSPSERHAKQATVPSTRTRTKVQMQGVAVGRAVDLTVIKDYEALIDELEKIFDIKGELRMQTKWAITFTDDENDMMLAGDDPWPEFCCMAKRIFICSREDVNKLKNKHSACSSEAEETLLSQDSQNREETQQVSCDLTA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1198 717 SUPERFAMILY DNA-binding pseudobarrel domain 122 263 IPR015300 -
Pvu6g1198 717 SMART B3_2 134 236 IPR003340 GO:0003677
Pvu6g1198 717 MobiDBLite consensus disorder prediction 1 20 - -
Pvu6g1198 717 Gene3D - 591 683 - -
Pvu6g1198 717 MobiDBLite consensus disorder prediction 694 717 - -
Pvu6g1198 717 MobiDBLite consensus disorder prediction 373 393 - -
Pvu6g1198 717 Gene3D - 294 366 - -
Pvu6g1198 717 Pfam Auxin response factor 260 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu6g1198 717 MobiDBLite consensus disorder prediction 373 402 - -
Pvu6g1198 717 Pfam AUX/IAA family 583 631 IPR033389 -
Pvu6g1198 717 ProSiteProfiles PB1 domain profile. 595 676 IPR000270 GO:0005515
Pvu6g1198 717 PANTHER AUXIN RESPONSE FACTOR 11 10 691 - -
Pvu6g1198 717 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Pvu6g1198 717 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu6g1198 717 Gene3D - 131 235 IPR015300 -
Pvu6g1198 717 SUPERFAMILY CAD & PB1 domains 591 671 - -
Pvu6g1198 717 CDD B3_DNA 132 234 IPR003340 GO:0003677
Pvu6g1198 717 Pfam B3 DNA binding domain 134 234 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1198 Pvu-Chr6 22990500 22995503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1198 25 682 B3 DNA Binding Superfamily AT4G23980 56.061 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu6g1198 B3 3.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1198 K14486 - gmx:100820503 1097.42