Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1196 ATGGACCATCAACCCCCACCCTGCCCCGACGACGACCTAACCACCGCCACCCCTAGGTCTGGCACGCGCCACCCAGTCTACCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCAGAAATTCGGGAGCCGCGCAAGAAGAACCGCATATGGTTGGGGTCTTTTCCGGTGCCAGAGATGGCGGCGCGAGCGTACGACGTCGCCGCGTACTGCCTCAAGGGTCGGAAGGCGCAGCTCAATTTTCCCGACGAGGTGGACTCCCTGCCGCTTCCCCCGTCCCGCACGGCCAGGGACATTCAGGCCGCCGCGGCCAAGGCGGCGCGCATGATGAAAGCGGTCGTCAGTGACGAGAAAAACAGCATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTGCTGGAGTTGCCCCGGAGGATCCTCGTGGACTACCTCTGGTGACATCGCCGATTGGACGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTCCTGGCGTGTCTATAA 552 0.6359 MDHQPPPCPDDDLTTATPRSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPPSRTARDIQAAAAKAARMMKAVVSDEKNSIADDDGDSGGDDFWGEIELPELMDGECCWSCPGGSSWTTSGDIADWTEEELSPQQPSFLACL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1196 183 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Pvu6g1196 183 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Pvu6g1196 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 173 - -
Pvu6g1196 183 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pvu6g1196 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 15 173 - -
Pvu6g1196 183 MobiDBLite consensus disorder prediction 1 27 - -
Pvu6g1196 183 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Pvu6g1196 183 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Pvu6g1196 183 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pvu6g1196 183 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Pvu6g1196 183 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1196 Pvu-Chr6 22942518 22943272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1196 17 183 AP2-EREBP Transcription Factor Family AT1G01250 58.621 1.19e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1196 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1196 K09286 - gmx:100819971 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1196 6 22942518 22943272 Pvu10g1198 10 38090570 38091511 PCT