Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1195 ATGAAGGTTGACGCGGGGTTAGGGAGCGTGGCGTGGGACGAAGAGGATAAGGCCATAGTTGGGGCTGTTCTTGGTGGTCTAGCTCTGGAGTTCTTAACAACAAACTCGGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAGGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTATGCGATTTTCTGGCAGCTCTCGCAGTCGAAATCTGGTGACTGGGTTCTGAGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAGGAGGGTGCGCTGAGAGGAAAGCTGAGGCTTCTTCGCGTGGATGAGGAGATGCAGCAGAGGATGAGGAAGGTGGTGTTACAGAAGCTGCACAATACTTTTGGAGGTTCGGAGGAGGACAATTATGCCTTTGGCCTTGACCACGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGGGGGCATGGTGTTCCAGGTACGTGCTTCGTCTCCGGGAAGCATTTGTGGCTGAAATCTGTGCCTGATTTCTGCGTGCGTTCTTCCTTGGTGAAATCCGCGGGAATTCAGACCATTGTTATGGTCCCTACTGATTTGGGAGTGGTGGAGTTGGGTTCTGTGAGAGTGTTACCCGAGAACTTTGAACTCGTGCAGGCTGTTAAGTCTGTATTCTCCACGCAGTGTTCCCAGTACCCTGGGGTGAACGTGAGCGCGGGTGGGAATGCGGTTTTTACCGGTTTGGCAATTGGGGATGGTAATAAGATAGATGGAGGTGTTCCAATTCCCAAACTTTTTTCGAACCCAATTGGCAATCGGACTGGCAATAGGACGCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAAGATAACAGGCCTTGGGCAGGCCATGCTCTCCCCAATGGGAACAACCTTAACAACAATCCAAATGTAAGGAATGGTCTTCATGTTCCAGGTTGGGCAGTGAATTCGGGTGTGAAGCAGGGTGGTCCTGTTGAGATTTTTGCTCCTAGGGCATCCACGAGCAGTGTTGTTGCGGAGCTGGTTAATGGCGTTAGACAGGATTTCAGGCTGGGCAACAGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTAGCGGAGCCACTTCTAGGCCTTCTCATGTGAGGCCGGTTGTTGTTGATTCGGAGCTTTCTGACGTCGAGGCCTCTTGCAAGGAGGAGCAACCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAGGCCGAGAGGCAGAGACGTGAGAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTGGTCCCTAATATCTCCAAGATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTATATCAACGAGCTTCAGGCCAAAGTCAAGATCATGGAGGATGAAAGAGAGAGATTTGGAAGCAGCTCGAAAGATGGATCAGTTTTGGAAGATAACTCGAGATCTGAAAATCAAAATCAAGAGAAGGAAGCTCCTGATGTGGATATTCAAGCTGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACTCACCCTGTATCAAAAGTAATTGAAACACTCAAAGAGGCAAAAATCAGTGTTGTAGAATCAAAATTTGCTGCTGCAAATGATACTGTTTTCCACACATTTGTAATTAAGTCCGAAGGATCTGAACAACTTACAAAGGAGAAGTTGATTGCTGTTTTTTCCAAACCAGAACCCAACCCATTGCAGCCATTGTCATCAGTTGCATAA 1848 0.4881 MKVDAGLGSVAWDEEDKAIVGAVLGGLALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLSWGDGCCREPNEEEEGALRGKLRLLRVDEEMQQRMRKVVLQKLHNTFGGSEEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGVPGTCFVSGKHLWLKSVPDFCVRSSLVKSAGIQTIVMVPTDLGVVELGSVRVLPENFELVQAVKSVFSTQCSQYPGVNVSAGGNAVFTGLAIGDGNKIDGGVPIPKLFSNPIGNRTGNRTHFREKLAVRKMEDNRPWAGHALPNGNNLNNNPNVRNGLHVPGWAVNSGVKQGGPVEIFAPRASTSSVVAELVNGVRQDFRLGNSYQPQRQVQMQIDFSGATSRPSHVRPVVVDSELSDVEASCKEEQPSVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEDERERFGSSSKDGSVLEDNSRSENQNQEKEAPDVDIQAAQDEVTVKVSCPFDTHPVSKVIETLKEAKISVVESKFAAANDTVFHTFVIKSEGSEQLTKEKLIAVFSKPEPNPLQPLSSVA* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1195 615 Gene3D - 431 503 IPR036638 GO:0046983
Pvu6g1195 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 441 501 IPR036638 GO:0046983
Pvu6g1195 615 MobiDBLite consensus disorder prediction 498 529 - -
Pvu6g1195 615 Coils Coil 484 504 - -
Pvu6g1195 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 438 487 IPR011598 GO:0046983
Pvu6g1195 615 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 6 603 - -
Pvu6g1195 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Pvu6g1195 615 MobiDBLite consensus disorder prediction 390 449 - -
Pvu6g1195 615 Pfam Helix-loop-helix DNA-binding domain 442 488 IPR011598 GO:0046983
Pvu6g1195 615 PANTHER MYC 6 603 IPR045084 GO:0003700|GO:0006355
Pvu6g1195 615 SMART finulus 444 493 IPR011598 GO:0046983
Pvu6g1195 615 CDD bHLH_AtAIB_like 435 500 - -
Pvu6g1195 615 MobiDBLite consensus disorder prediction 408 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1195 Pvu-Chr6 22928618 22930465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1195 7 613 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.276 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g1195 bHLH-MYC_N 2.8e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1195 - - gmx:100801502 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1195 6 22928618 22930465 Pvu10g1197 10 38037818 38039710 PCT