Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1193 ATGAGTATGGAATCAGAAACCCAAAGAAAAATTGAGGAAACAGTGTTGGACATACTCAACAAATCCAACATGGAAGAAGCCACTGAGTTCACCATTCGACTCACTGCCTCGGACCGACTCGGAATCGACCTCTCTGACCCCACCAGTAAACACTTTGTCAGAAGCATCGTTGAGTCCTATCTTCTCTCCGTTATGGCCAATGGAAAGGCGGAGGAGAAGAAGGACAATGTCGTTGAGGCCAACGAAGATTTGGAGGTGATGAAACTTAGGAGGGAAGATCCTGAAAGCGTTATTTGTCATCTGTCAGACAGGAGGAACGTGGCTGTGAAAACATTCAAAGGGGTATCACTGGTCTCAATTAGGGAGTTTTATATGAAAGATGGAAAACTAGTTCCTGGTTCTAAAGGTATAAGTTTACCTTCTGAACAATGGTCAATCTTCAAGAAGAGTGTTCCTGCCATAGAAGAAGCTATCATAAAGATGGAAGGAAGGATAAGATCGGAGCTTAATGGTAAACAAAATGGAGATGGGTCAAATTCAGTCCCTCTTGAGCCTGTTGTCCCCGTTCCTCCACTTGAGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATTGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCAGCAGATGACATTATTATTGAAACAATTAAAGATTGAATATGTGCTAATTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACCTTGTCACAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATTTAGTGTGTTCTCGTAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGCGGACAGAAAAATGAGCAGCAAGGAGTTGTGGGAAGAGCTAAATCTGGTTTATCTCTCTGAGGAATTTGGAACCAAGAGATCTATAGTGAAAAAGTACATTGAATTTCAGATAGTTGATGAAAAAACAGTGAGCGAGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATGGATGATAACTTTCATGTCAATGTCATCATTTCAAAGCTTCCACCATCGTGGAAGAACTTCTGCATGAAGTTATTGCGTGAGGAATATCTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACGACGAGTGGGTGAACATTCTAACAGTGTGGGATTTCACCAGGACAATAGAGGTGGTGGACAGAGGAGGGTTGACTATAAGCCTCTAGGAATGTGCAGGAATAGGCCAGAAATCAATGCCAGGAGTATACCCTGTAATGTATGTGGCAAGAGGGGACATCTTTCTAAAAATTGCTGGAGAAGAAGTGACAAGCAAACTAATGAGAGGAAAGCAGAAGAGGATGTGAACACACCTACTACAGAAATTGGTATTGTGGCTGCTACCCCTCCCCCTACCTAG 1485 0.4303 MSMESETQRKIEETVLDILNKSNMEEATEFTIRLTASDRLGIDLSDPTSKHFVRSIVESYLLSVMANGKAEEKKDNVVEANEDLEVMKLRREDPESVICHLSDRRNVAVKTFKGVSLVSIREFYMKDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKMEGRIRSELNGKQNGDGSNSVPLEPVVPVPPLEPVVPVPPLEPIVPIEVVRFDGKNFQFWAQQMTLLLKQLKIEYVLIEPCPNAALGEGAKAEDLVTAKAAERRWLNDDLVCSRNILSHLSDPLFNQYADRKMSSKELWEELNLVYLSEEFGTKRSIVKKYIEFQIVDEKTVSEQVRDLNGIADSIAASGIFMDDNFHVNVIISKLPPSWKNFCMKLLREEYLPFWKLMECIQVEEEFRCGVRRVGEHSNSVGFHQDNRGGGQRRVDYKPLGMCRNRPEINARSIPCNVCGKRGHLSKNCWRRSDKQTNERKAEEDVNTPTTEIGIVAATPPPT* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1193 494 Gene3D Transcriptional Coactivator Pc4; Chain A 90 166 IPR009044 GO:0003677|GO:0006355
Pvu6g1193 494 ProSiteProfiles Zinc finger CCHC-type profile. 447 460 IPR001878 GO:0003676|GO:0008270
Pvu6g1193 494 SUPERFAMILY ssDNA-binding transcriptional regulator domain 98 160 IPR009044 GO:0003677|GO:0006355
Pvu6g1193 494 Pfam gag-polypeptide of LTR copia-type 265 396 - -
Pvu6g1193 494 Coils Coil 70 90 - -
Pvu6g1193 494 MobiDBLite consensus disorder prediction 461 478 - -
Pvu6g1193 494 MobiDBLite consensus disorder prediction 461 494 - -
Pvu6g1193 494 PANTHER PBF68 PROTEIN 3 482 - -
Pvu6g1193 494 Pfam Transcriptional Coactivator p15 (PC4) 99 149 IPR003173 GO:0003677|GO:0006355
Pvu6g1193 494 Pfam DEK C terminal domain 7 61 IPR014876 -
Pvu6g1193 494 PANTHER PBF68 PROTEIN 3 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1193 Pvu-Chr6 22911858 22915012 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pvu6g1193 Retrotran_gag_2 2.3e-13 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1193 - - var:108341934 771.926