Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1181 ATGATGTTCTTGAAGCTCCTGTTCCACTTCTTCATACTCTTTGCTGTCGCATATGCCTCATCTGATTGCCAATATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTTCCCTTCCAAATACAAGGTCAGCAACATCCATATTGCGGGTATCCTGGTTTCAAACTAACTTGTTCCAATGATAGCAAAACAGTTATAACACTTCCTTACACGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAACAGATGCAAGTGTATGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGTCTCAACCTTTCAGGTTCTCCCTTCATTGTTGCCTCTTCACTCCGCAACTACACCCTCTTAAGCTGCCCAACACGGCACACGGGGTCACAGTTCATTCCCATTGACTGTCTCAGCAATTCAACATCTTTTGTGTCTGCTATTCCTTCTGTCAACTTCACCAATTCATTGCTCCAGTCTTGCCATGTTCTGAAGAAACTCTCATTTCCAGTCCTGGGACCAAATCAGGAAACTTTCAGAGATGAACTCCTTAGTGGAGATCTTCTATTAGCATGGCATGCACCTGACTGTAGATACTGTGAATCACAAGAAGCTATGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTCTGATTACCAAACGGAGCGTCCACAGCATGGTCTTCGAGTTTTTGGAATCATCACATTATCCACTGTTGGACCAGCTATCATATGCGCCATTGGAATGGCATGCTACGCCTCCTTCATGTACAGAAGAAGCAGCACAGCCAGAATTGGTGCAGCACAGAGTTCTACACCAACTGGCATGTCACCTCAACCTGCCATTGTTAGGATGGGCTTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAATTGGGGGAGAGCAGAAGAGTGCCAGGACCTAATGAGGGATGTTGCACCATATGCCTCTCAGAGTATAAAGCCAAAGACACAATAAGATGCATTCCTGAATGTTCACATTGCTTCCATGCTGACTGCATCGATGAATGGCTTCGCATGAACAGTACATGCCCTCTTTGCCGCAACTCTCCTTCCCATCCCTCCTCTACTGTTCTATCCACTGACCACTGA 1131 0.4509 MMFLKLLFHFFILFAVAYASSDCQYYSWCSDNNILIRFPFQIQGQQHPYCGYPGFKLTCSNDSKTVITLPYTGKFFVRNINYLRQQMQVYDPDDCLPKRLLSLNLSGSPFIVASSLRNYTLLSCPTRHTGSQFIPIDCLSNSTSFVSAIPSVNFTNSLLQSCHVLKKLSFPVLGPNQETFRDELLSGDLLLAWHAPDCRYCESQEAMCGFESINSDQVRCFSDYQTERPQHGLRVFGIITLSTVGPAIICAIGMACYASFMYRRSSTARIGAAQSSTPTGMSPQPAIVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKAKDTIRCIPECSHCFHADCIDEWLRMNSTCPLCRNSPSHPSSTVLSTDH* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1181 376 Pfam Ring finger domain 319 361 IPR001841 -
Pvu6g1181 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 369 - -
Pvu6g1181 376 SMART ring_2 319 360 IPR001841 -
Pvu6g1181 376 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 2 369 - -
Pvu6g1181 376 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Pvu6g1181 376 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Pvu6g1181 376 CDD RING-H2_PA-TM-RING 318 361 - -
Pvu6g1181 376 SUPERFAMILY RING/U-box 318 365 - -
Pvu6g1181 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 365 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1181 Pvu-Chr6 22822027 22824307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1181 29 365 C3H Transcription Factor Family AT2G25410 42.651 1.73e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1181 - - gmx:100799895 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1181 6 22822027 22824307 Pvu10g1186 10 37897412 37899491 PCT