Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1179 ATGGAGCAGAACCGGGGCAGCAAGATGTGCAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCTTATTCCCCTCTCCGATCATCTACGCGAGTTCCATCAAGGATCGCCTCTTCGAACTCACCGGAATTCCCGTGCAGCACCAGCGCCTCGTCACCGGCTTTCGCCACCTCAACGATGAAAATTCGGCGATCCAATGCTCCCCGGAGGATGGCAACATGTTCCCGTCGGTGCGGCTGCTGCTGCGTCTCAAAGGCGGAAAAGGAGGCTTCGGGTCTCTTCTTCGCGGCGCCGCGACGAAGGCAGGGCAGAAGAAGACCAACAATTTCGACGCGTGTCGGGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAAAAGAGGTTGGAGGAGTGGAAGGCCGGAGAAAACGAGAGAAAATTCGAGAAGGTGGCGGAGGACTTTCTCAAGAAGCAAATGAAGAAGGGTAAGGGTAAGGGAAAGGCTGACGGTGATAGTGAAGCTCACAAATACGTGGAGAAATATCGGGCGGAATCTGAACGTTGTGTTGCGGATGTTGCTTTGTCCGTTAAGGAGGCTCTTACTGCCAAACGCAAGAGCCCTTCACAACCCCCCCGTGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGCGATTATAGTGACGATTCCGATGTTGAGGGGGAAATGGAGAAATCTGATTTGTTGAATGACCAGAATGAGTCTGAGTCAACTAAGGCTGAGGGAAGTCTGGGTTCAGTAACTGGTGGAGGAGGCGCCTCTGGTTCTGGCTCTTGTGAGAGTGGGTCCGAGGAAGAAAAGGAAACTGTTGCACAAGTAAATGTCGGATCTGTTGGGTTGCTGACTGATGAAAGTATTCAGGTCATGGACGAGCCTGTGATAAGCAATGAGACTACTGCAATGCCAAATGAGTCGGTGGCTGTTGGACTCAATGCGGAAGAAGATGGAAATCAGGATTGCCATGGAGGTGTGTCTGATAAGTTTGATGGTGCTCTGAATCAGGCCTCAAATATTACAGGCTCTGAAACTGTGGCCACTGGCAAATCTAATAATGATATGGAAATTGATGGATCACTTGAGCATAAAGCAGCAGTCAATGAAGAGAGCTCGCCAAGCACTAGTGAACCTGCAATGGATGAGCCCCTTAATTTTGATGCCTTTAACTCCTCTGCCGATCTTGAGGTTATTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCTCTGGATAAACTTCCAAAGAAGCTGCTTGCTAAGAAGTAA 1380 0.4993 MEQNRGSKMCNLFVKHLDGKTLTLLFPSPIIYASSIKDRLFELTGIPVQHQRLVTGFRHLNDENSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGENERKFEKVAEDFLKKQMKKGKGKGKADGDSEAHKYVEKYRAESERCVADVALSVKEALTAKRKSPSQPPRDAKKLKIWMGKRKLNESDSDYSDDSDVEGEMEKSDLLNDQNESESTKAEGSLGSVTGGGGASGSGSCESGSEEEKETVAQVNVGSVGLLTDESIQVMDEPVISNETTAMPNESVAVGLNAEEDGNQDCHGGVSDKFDGALNQASNITGSETVATGKSNNDMEIDGSLEHKAAVNEESSPSTSEPAMDEPLNFDAFNSSADLEVIGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1179 459 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 162 IPR024974 -
Pvu6g1179 459 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 11 458 - -
Pvu6g1179 459 PANTHER SPLICING FACTOR SF3A-RELATED 11 458 - -
Pvu6g1179 459 Pfam Replication stress response SDE2 C-terminal 383 458 - -
Pvu6g1179 459 SUPERFAMILY Ubiquitin-like 7 89 IPR029071 -
Pvu6g1179 459 MobiDBLite consensus disorder prediction 252 277 - -
Pvu6g1179 459 MobiDBLite consensus disorder prediction 198 287 - -
Pvu6g1179 459 MobiDBLite consensus disorder prediction 205 229 - -
Pvu6g1179 459 Gene3D - 8 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1179 Pvu-Chr6 22814811 22819730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1179 393 458 C2H2 Transcription Factor Family AT5G06160 45.455 4.95e-10 59.7