Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1177 ATGAATTCAAAAGGACATAAATTTGTGAGGTTTGAAGAGTGGCAATCGGAGTCATCTTTTAACGTACAGAAAAACGATGAAAATCACAAAAGAACACCAAGTGTGATTGCAGTTTTGAAGAGTATAGGAAGAAGGGTTGAGAGTAGGTCTGAGAAGATGAAGAACTTTAACAGAGTTTCAGATGTTCATCCCGTAAGTGATGGACAGAAAAAGTCGCCACCTAGGAAGGTCATTCTTGATCCAAAGGATCCAATGCTTCAGAAATGGAACAAAATCTTTGTAATATCGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTAATGATAAAAAAAAATGCCTTGATATGAGTGGATCATTGCAGATCACTGCCAGTGTTTTTCGCACCTTCTTTGATCTATTCTACGTTCTTCACATAATCTTTCAGTTTAAGACAGGGTTCGTTTCCCCTTCTTCTCGTGTTTTTGGATCGGGTGACCTCAATGATGATCCTGTGGCTATAACTAAAAGATACTTAACTTCATACTTCATCATTGACGTTCTATCTATTATTCCACTTCCACAGGTGATTGTTTTAGCCATTCATCCAAACATGAAAATGAATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCTGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATCCATCCACTGTTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCAGGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATTTAGTTGGAGCTTTCTGGTATTTGCTCTCGGTAGAGTCAGAGGTGCGTTGCTGGCGCACAAAGGTGGAGAATGGAGACTTGAGTTGTAGAAACCGCATCCAAGAGACCATTACACTTCTCAATCAAACATGTTCTTTGGTTGACCCTGATGATATCAAAGACGGAGAAAACTACAATTTTGGAATCTTTTTTTATGCTTTACATTCAGGTGTGGTAAAATCAACAACAGAATTTCCCAATAAGTTCTTCTATTGCTTTTGGTGGGGTTTGCGCAGTTTAAGTTCTCTTGGACAAGATCTCAAGACAAGTACTTATGTGCCAGAGATAGCCTTTGCAATCTTCATTTCCATCTTTGGATTGGTTTTATTCTCGTCACTTATTGGAAACATGCAGGAATATTTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGAGAAGAATTAGACATTACGAACAGTATCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCCTAGCTTTGGTTAAAAAGGTGCCATTGTTTAAGGAAATGGATGAGCAGTTGTTGGATGCAATATGCACTAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCACATTTTTCGTGAAGGAGATCCGGTTGATGAGATGCTTTTCATTATGCGTGGACAAGTCTCTACCGTGACCACAAATGGTGGAAGAACTGGTTTCTTCAATTCCTCTTTTCTCGTAGCTGGTCAATTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTTCCCATTTCAACTAGGACAGTAGAAACCGTATCAGAAGTTGAAGCCTTTGCTCTCATGGCGGATGACTTCAAGATTGTTGCTTCCCAATTTCGCCGTCTTAGCAGCAAACAGCTCCAACACGCTTTCAGGTTCTATTCCTTACAGTTTCGGACATGGGGTGCCTGTTTCATTCAAGCAGCTTGGCGTCGATACTGGAAAAGGAAGATTGAGAGGTCTTTGCATGTAAAAGAAGACAAGCTACAAGATGCTTTGACAAATGATGATGGCTCTACTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAACTTGAGAGAAAATAACAGACAGAATAGAACGCAACAGAGACTACTGCCTTTGCTACCTCCAAAGCCAGCCGAGCCAGATTTCACTTCTCTGAAACACTAA 2118 0.4127 MNSKGHKFVRFEEWQSESSFNVQKNDENHKRTPSVIAVLKSIGRRVESRSEKMKNFNRVSDVHPVSDGQKKSPPRKVILDPKDPMLQKWNKIFVISCVLAVSVDPFFFYIPVINDKKKCLDMSGSLQITASVFRTFFDLFYVLHIIFQFKTGFVSPSSRVFGSGDLNDDPVAITKRYLTSYFIIDVLSIIPLPQVIVLAIHPNMKMNPFVAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTETAGAGAAYNLFLYMLASHLVGAFWYLLSVESEVRCWRTKVENGDLSCRNRIQETITLLNQTCSLVDPDDIKDGENYNFGIFFYALHSGVVKSTTEFPNKFFYCFWWGLRSLSSLGQDLKTSTYVPEIAFAIFISIFGLVLFSSLIGNMQEYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKRRIRHYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPLFKEMDEQLLDAICTRLKPVLYTEKSHIFREGDPVDEMLFIMRGQVSTVTTNGGRTGFFNSSFLVAGQFCGEELLTWALDPNSSSNLPISTRTVETVSEVEAFALMADDFKIVASQFRRLSSKQLQHAFRFYSLQFRTWGACFIQAAWRRYWKRKIERSLHVKEDKLQDALTNDDGSTLSLGATIYASRFAANALRNLRENNRQNRTQQRLLPLLPPKPAEPDFTSLKH* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1177 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 703 - -
Pvu6g1177 705 Gene3D Jelly Rolls 475 595 IPR014710 -
Pvu6g1177 705 Pfam Cyclic nucleotide-binding domain 498 589 IPR000595 -
Pvu6g1177 705 Gene3D Helix hairpin bin 404 468 - -
Pvu6g1177 705 SUPERFAMILY cAMP-binding domain-like 406 601 IPR018490 -
Pvu6g1177 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 703 - -
Pvu6g1177 705 MobiDBLite consensus disorder prediction 678 705 - -
Pvu6g1177 705 SMART cnmp_10 477 608 IPR000595 -
Pvu6g1177 705 Pfam Ion transport protein 89 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu6g1177 705 Gene3D - 91 401 - -
Pvu6g1177 705 SUPERFAMILY Voltage-gated potassium channels 81 399 - -
Pvu6g1177 705 ProSiteProfiles cAMP/cGMP binding motif profile. 477 561 IPR000595 -
Pvu6g1177 705 CDD CAP_ED 477 608 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1177 Pvu-Chr6 22804166 22808740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1177 1 702 Ion Channels AT5G53130 61.196 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1177 K05391 - gmx:100797784 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1177 6 22804166 22808740 Pvu10g1180 10 37791631 37797374 PCT