Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1172 ATGGAAGAGAGCACCAAAAGAAAATACTCTAGCCTGATCCATGAACTTATCCAAGGAAAGGAGCTAGCAAAGCAGCTCGGTAACCATCTGGTTTCTTCTTCTCCATCACCCCATGAAACCAATGAATTGTTGGTTGATCAAATTCTCTCGTCCTATGAGAAAGCCCTCACCATGCTGAACCGAGGGTTTACTGTGGGAGAGGCCAAACCCACCACTGGCACCATGATGGATTCCCATTGTTCTCTTACAAATGGTGCAAGTCCCAAAAGTGAGGTCGCGGACCGTGAATTTGAGCACAAAGCTGTCACCAAGAAAAGAAAGACCATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGTACAGGACTCGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAGAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGCCTGGCAACAAAACAAGTTCAAAGGTCAGATGAAGATCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACGTGCACGCAAGCTAAGTATTTGAACAAGTCATTCCCCTCAAACATAAAGATGGGTTTGGGGGAAAATCAATTTCACAATGATCAAAATAATCAACCACTTCACGAGAAAACACAACATACCCCAGCGGGGATTTTTACCTTTGAAACAGAGGGTATAGTCAAAACCGAGGAATTGGAAATCAAGGAGGATATCCTTACATGGTTTTCATTTCCTTCTCAATCAAATGGATCAGAAAACGAGGACAACATGTTACCCGAGTCGACGCTTGAAAACCAATTCACGGAAAGCTTTTCTCCTGTATTCATATCACCAGCAACTTCAGAATCAAACCCCTTTTGTTTGTCAGCATGCCACTTGGACAGCACTGAACTGTTATGCCAACATATACAAACCTCGGACAACACTGATATCACTGAGACAGTTTCAGCCCCAACTTCAGTAACCAACTCCCCAATTCTGGATTTGGACATTTGGCTTCATAAAGGGGATTTTGACACAGATTTCCCTTTCAACACTCCTGATTTTTTCTCTTTATTCGAACTTCCCTGCACTTCCACTTAG 1122 0.4323 MEESTKRKYSSLIHELIQGKELAKQLGNHLVSSSPSPHETNELLVDQILSSYEKALTMLNRGFTVGEAKPTTGTMMDSHCSLTNGASPKSEVADREFEHKAVTKKRKTMPRWTEQVKICSSTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKYLNKSFPSNIKMGLGENQFHNDQNNQPLHEKTQHTPAGIFTFETEGIVKTEELEIKEDILTWFSFPSQSNGSENEDNMLPESTLENQFTESFSPVFISPATSESNPFCLSACHLDSTELLCQHIQTSDNTDITETVSAPTSVTNSPILDLDIWLHKGDFDTDFPFNTPDFFSLFELPCTST* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1172 373 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 358 - -
Pvu6g1172 373 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1172 373 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1172 373 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1172 373 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu6g1172 373 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu6g1172 373 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 358 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1172 Pvu-Chr6 22762481 22764805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1172 16 199 WRKY Transcription Factor Family AT5G24110 46.739 6.20e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu6g1172 WRKY 5.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1172 - - gmx:100790050 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1172 6 22762481 22764805 Pvu10g1168 10 37576223 37578860 PCT