Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1156 ATGGAAACCATTCTGAGGGAGGAGAAAGTTGTCACTTACATGCATGTCAAACATGGCATTTTGAACCAAACACCAAAGATAGTTAGGATTTCTATGATGGATCCCTATGCCACAGATGATGAAGATGAAGGGTTGGTTAACCTTCCTAAAATAAAGAAGATTGTGAATGAAATCAGAATTGTGGAGAAGAAGCCTTCAACCACTGTGTCAATGAACCAACTTTACAAGGAAAAAACTGAAGAGCGTGGTAGAAGAAAACTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCTGCAGAAATAAGAGATCCTGTGAAGCGAACAAGAGTCTGGTTAGGGACTTTTGACACTGCTGAAGAAGCTGCCATGGTTTATGACAAAGCAGCTATTAACTTAAGAGGTTGCAATGCTCTCACTAATTTCATCATGCCTCCTACAAGGGAAGACAGCCACAGGGATGCTATTTCTTCTGAGTATGGTTATGATGAATCTCAGGATAGTGTGACTGGTTTGGTTGAGAATGTGAGTGATTCAAGTAAAGAGTCTCATCTGCCTTCACCCACTTCTGTGCTGGGACTTGAACATGAGAAACTTGAGTTAGAAGAAGTTTTTCAAACAGATGGTTTGGTTATAGAAGATCCAACTTTCGAAGATACTTTTTTAGATTCACAAGATTTCAATTTTGAAAATCATTTTATCACTGAGACTAATGTAAAACAGTTTGATGACAGTCTGAGTGATATTTCCCATTTTCTCAATGAGAATTTTCAATCCTGCAACTGGGATATAGATAGTTATTTCAACAATCTTTCTCCGTGTTCACCAAGTCCACGAAGCGAAGTTTTAGAGTGA 855 0.3906 METILREEKVVTYMHVKHGILNQTPKIVRISMMDPYATDDEDEGLVNLPKIKKIVNEIRIVEKKPSTTVSMNQLYKEKTEERGRRKLRGVRQRPWGRWAAEIRDPVKRTRVWLGTFDTAEEAAMVYDKAAINLRGCNALTNFIMPPTREDSHRDAISSEYGYDESQDSVTGLVENVSDSSKESHLPSPTSVLGLEHEKLELEEVFQTDGLVIEDPTFEDTFLDSQDFNFENHFITETNVKQFDDSLSDISHFLNENFQSCNWDIDSYFNNLSPCSPSPRSEVLE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1156 284 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Pvu6g1156 284 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 270 - -
Pvu6g1156 284 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 7 270 - -
Pvu6g1156 284 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 CDD AP2 86 142 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Pvu6g1156 284 SUPERFAMILY DNA-binding domain 86 143 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1156 Pvu-Chr6 22619263 22620117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1156 2 277 AP2-EREBP Transcription Factor Family AT4G27950 36.424 3.22e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1156 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1156 - - var:108318676 320.857