Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1131 ATGGCGAAGAGGGAGCGAGTCAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAGGTTGAGGGAATTGGTGAAGGCCATCGTGGACTCCGACGACTACACGGTGGAAGCCGCCGACGAAGCCATCGCCACCCTTTCGGCTCTCAAACATTTTAAGTCTCCAAACTCTTTGGACGACTTTCCCCTTCCTCCCGAATTTCGATGCCCCATTTCAACCCAGTTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAGAGGTGGTTGAAAGAGGGCCACAGAACGTGTCCACAGACCCAGCAGGTCTTGTCTCACTCAATTTTAACACCTAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGTAGGGACCGTGGAATTGAGCTTCCTAAACCTGTTAATGACATTGATGAAGTGGTAACTAATGCGGATAGGAACCATTTGAATTCGTTGCTTCGCAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCTAAGGAGCTGCGCCTTTTGACAAAGCGAATGCCTTCGATTCGAATTCTTGCTGGGGAGTCCAGTGATGTGATTCCCCAATTGCTGAGTCCATTATCATCGCCCGGCACGGCTTCTGCTGACCCTGATCTCCACGAGGACTTGATCACTACGGTTCTCAATCTCTCTATCCATGATGATAACAAGAAGGGCTTTGCAGAGGATCCTGCAGTGATTTCTCTGCTTATTGATGCCTTGAAAAGTGGAACAATTCAAACGAGGAGCAATGCTGCTGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAACACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGAGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTTTGTCTTGTACACGAGAATAAAGGGAGGACAGTGCGAGATGGGGCCGTTCGGGTTATTCTGAAGAAGATGATGGACCACATTCTGGTTGATGAGTTGTTGGCTATACTGGCACTCCTATCCAGTCATCCCAGGGCTATTGAAGAAATGGGTGATCTAGGTGCTGTTCCTTTGTTATTGAGGATTATTAGGGAGAGCACATCGGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCAAATGGTACACTGTTAAATCTTGCACAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAACGGTATTCTTGAAAGGCTTAATAGATCCCCCTACTTAACACACACTGCTTAG 1332 0.4632 MAKRERVRGVSASELKERLRELVKAIVDSDDYTVEAADEAIATLSALKHFKSPNSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLKEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRDRGIELPKPVNDIDEVVTNADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILAGESSDVIPQLLSPLSSPGTASADPDLHEDLITTVLNLSIHDDNKKGFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILKKMMDHILVDELLAILALLSSHPRAIEEMGDLGAVPLLLRIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLLNLAQCGTSRAKRKANGILERLNRSPYLTHTA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1131 443 Gene3D - 338 437 IPR011989 -
Pvu6g1131 443 SUPERFAMILY ARM repeat 150 433 IPR016024 -
Pvu6g1131 443 SUPERFAMILY RING/U-box 50 138 - -
Pvu6g1131 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Pvu6g1131 443 Gene3D - 191 337 IPR011989 -
Pvu6g1131 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Pvu6g1131 443 PANTHER U BOX DOMAIN-CONTAINING 10 441 - -
Pvu6g1131 443 CDD RING-Ubox_PUB 65 107 IPR045210 -
Pvu6g1131 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 10 441 - -
Pvu6g1131 443 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
Pvu6g1131 443 SMART arm_5 229 270 IPR000225 GO:0005515
Pvu6g1131 443 SMART arm_5 351 392 IPR000225 GO:0005515
Pvu6g1131 443 SMART arm_5 271 311 IPR000225 GO:0005515
Pvu6g1131 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1131 Pvu-Chr6 22458554 22460522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1131 123 443 U-box Gene Family AT3G07360 59.517 4.45e-125 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1131 - - gmx:100806619 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1131 6 22458554 22460522 Pvu6g1131 6 22458554 22460522 ECH