Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1120 ATGTTCAAGCTATCTCGCGTGCTTCATCTCACTACCACTTCTAGGCATAGGCTGTTGGAAGTGTTTTCATCTAGAAATGTTGAAGTTGGAGACTCTCTGCGGGATAGGCGTGATTTTACCTACTCAGCTGGCATTTCTACTGCTACAAATAATTATGCTGCCAAAGGATATGCTTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCTTGTCTTCCAACTTTTACAAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATAACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCCGCCACTGAAATTGGTTCTTTGATAACGATGGGTTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAGGTAAGGAAGAGCTTATCAATTAAGCCTAATGCAAACAGCAATGGATATTTTGTGTCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATTACTAATCAGCAATCTAGAGGCACAGTGGGCCTTCAACAGAAAGGTGGCTCTCAAGTTTTAGACTTGGAATGGGAAAAATGA 732 0.4194 MFKLSRVLHLTTTSRHRLLEVFSSRNVEVGDSLRDRRDFTYSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMITFMHSIGERKYDWEKRQRFALSATEIGSLITMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGLQQKGGSQVLDLEWEK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1120 243 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pvu6g1120 243 Gene3D Transcriptional Coactivator Pc4; Chain A 52 225 IPR009044 GO:0003677|GO:0006355
Pvu6g1120 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pvu6g1120 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 243 - -
Pvu6g1120 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 221 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1120 Pvu-Chr6 22317917 22321139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1120 37 243 Whirly Transcription Factor Family AT1G71260 59.906 7.34e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pvu6g1120 Whirly 1.4e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1120 - - var:108343725 446.047