Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1117 ATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCACCACCCCCACCACCACCATCACCACCAGCCCCAGCCACCGCCGCAGACAGCTGCAACCACCACCGCCTCCCCGACTAACGGCCTCTTGCCCAACGCCGACGGGTCCCACATGCTGTACCCTCACTCGGTGGCCTCGGCGGTGTCGTCGCAGCTGGAACCGGCCAAGAGGAAGCGGGGGCGGCCGAGGAAGTACGGCACGCCGGAGCAGGCTCTTGCCGCGAAGAAAGCCTCTACGGCGTCGTCTCATTCGTTCTCCGCGGACAAGAAGCCCAACTCCCCAACGTTCCCTTCTTCCTCATCTTTCACGTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAGGGGTTCACTCCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGGCAGAAAATTATGTTATTCATGCAACAAAGTAGGCGTGAAATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTACGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTAAGTGTATGTTTATCGAACACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGACCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTAGTCCAAAAGTTGATGCCTCTGTAAGCAAGTTGCCACCACCACCAGTTGGTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCAGTCGAGTCTCCTCCTGGTGGAAATCCAATACGTGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCAGGGTACGCCTCCCCGGTCCACAGACTGGGCTCGTCGAGATTCAAGAAATAGCAGTTTTGAGCTGACAGGAAGGACAGGTCATGGGACGCACCAGTCTCCTGAGAATGGGGGCTATGAGCAAATTCCCGATTGA 1077 0.5265 MEPNDNQLTSFFHHHHHHPHHHHHHQPQPPPQTAATTTASPTNGLLPNADGSHMLYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTASSHSFSADKKPNSPTFPSSSSFTSKKSHSFALGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSSPKVDASVSKLPPPPVGEPVSSLGFRQSVESPPGGNPIRGNDEHQAMGGSHFMIQQLGLQGTPPRSTDWARRDSRNSSFELTGRTGHGTHQSPENGGYEQIPD* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1117 358 CDD DUF296 136 247 IPR005175 -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 13 27 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 254 300 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 90 120 - -
Pvu6g1117 358 Gene3D - 137 262 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 29 47 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 1 120 - -
Pvu6g1117 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 247 IPR005175 -
Pvu6g1117 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 248 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 334 351 - -
Pvu6g1117 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 350 IPR039605 GO:0003680
Pvu6g1117 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 350 - -
Pvu6g1117 358 MobiDBLite consensus disorder prediction 314 358 - -
Pvu6g1117 358 ProSiteProfiles PPC domain profile profile. 131 269 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1117 Pvu-Chr6 22292627 22298378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1117 33 358 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.137 1.39e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1117 - - gmx:100809675 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1117 6 22292627 22298378 Pvu6g1117 6 22292627 22298378 ECH