Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1115 ATGGAGAAAGAGATGCTTCTTTTGTTGTTGCTGTTGGTTATGGTGCTTTCTGCCTTTGCTATTGATGTGGAATATTCACACTGCAATTGTGATGAGGAAGGGCTTTGGAGCATCCACAACGTTCTGGTTTGCCAGAAAGTGAGCGATTTTTTCATCGCCATTGCATATTTTTCCATTCCCCTTGAGCTCCTTTACTTTGTCAGTCGCTCCAATGTCCCCTTTAAATTGGTCTTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATTGACCCATTTACTCAACGCCTATACTTACTATGGCCCCCACTCCTTCCGGTTGGTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACCCTCATACCTCTTCTGCTGAAAATTAAAGTGAGAGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGCCAAGAGGTTGGGATTATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTGGATAAGCATACCATATTGTATACCACACTTGTTGAGCTTTCCAAGGCCTTGGACTTGCACAATTGTGCAGTTTGGATGCCTGATGATGATAGGAGGGAAATGCTTTTGACACATGAGTTGAAATCAAACTCAGCAGATAGTTTTCACAATTCTATTCCTATTAGTGATCCGGATGTGTTGGACATAAAGAAGAGCAAAGGGGTGTGGATTTTGAGGCCTGATTCGAAACTAGGAGCTGCAAGTAGCGGTGGTGGATCTGGGGATTCAGGTGCCGTGGCAGCCATCCGCATGCCGATGCTTCATGTTTCCAATTTCAAAGGAGGGACACCCGTGTTTGTTGAAACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGACCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGATCAGGTTGCTGTGGCCTTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTGCAACATGCTCAGAAGAATGCAATGATGGCCAGGAAGGCAAGAAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGGCCAATGCATTCAATCCTGGGGTTGCTTACAATGTTTCAAGAGGATAATACAAGGCCAGAACAGAAGATTATTATTGACTCAATTTTCAAAGTTAGCAATGCCCTATCACGATTGATTAATGATGTGATGGAGATTTGTGCTAATGACAATGGGAGCTTCCGGTTAGAGATGAAACCTTTCAGTCTGCATTCAATGATGAGGGGAGTTTCTTGCACTACTAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAGTCGATGTTGACAAGTCTTTGCCTGATCTGGTCATAGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGATAGAGGGACTCTCATATTTCATGTTTATCTTGAAAGTAATAGTGGAGATAAAGATGATAAAAATATTGGAATGTGGAGATCAAACATGCAAAATGATTATGTACATATAAAATTTAGTTTTCATATAAATGGTATTAGTTCCCAGTCAGATGAATCATTTTCAACTACAAATTATAATGTTAAAAGGCACTTCAACAATGAACCTAAGGAAGTACTCAGCTTCAGCATGTGCAAAACGCTGGTGCAGATTATGCAAGGTAATATTTGGATATCAACTAACACTCTGGGTTTGGCACAAGGAATGACGCTCCTTCTCAAGTTTCAGACAGGATCATCACATGGAAGATTCAATCTTGCTCCTAAAGATTTTTCAAACTCCCAGTTTAAAGGGCTTAAGGTTGTGTTAGCTGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTGGGATGTCACGTAACTGCTGTTTCATCAGGATTTGAATGTCTCGGTGTATTAAGTGTCTCCGGTAACTTATTTAAAATTATTTTCTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAAAAGGATTAGGAAATTGCAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCTAGTGCAGAAGAGCACATCAAGGAGAGATGTATACAGGTGGGAATGAATGGATTCATTCGAAAACCTATTCTCCTTCATGAAATAGCAGATGAACTTACAAATGTACTGCAACGTACAGGTGAAAAATTGTAA 2277 0.4111 MEKEMLLLLLLLVMVLSAFAIDVEYSHCNCDEEGLWSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFRLVLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQKEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDDDRREMLLTHELKSNSADSFHNSIPISDPDVLDIKKSKGVWILRPDSKLGAASSGGGSGDSGAVAAIRMPMLHVSNFKGGTPVFVETSYAILVLVLPNSNSRAWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQHAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLTMFQEDNTRPEQKIIIDSIFKVSNALSRLINDVMEICANDNGSFRLEMKPFSLHSMMRGVSCTTKCLCVYKGFGLEVDVDKSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLIFHVYLESNSGDKDDKNIGMWRSNMQNDYVHIKFSFHINGISSQSDESFSTTNYNVKRHFNNEPKEVLSFSMCKTLVQIMQGNIWISTNTLGLAQGMTLLLKFQTGSSHGRFNLAPKDFSNSQFKGLKVVLADDDDVNRTVTKKLLEKLGCHVTAVSSGFECLGVLSVSGNLFKIIFLDLHMPEMDGFEVAKRIRKLQSHNWPLIIAFTASAEEHIKERCIQVGMNGFIRKPILLHEIADELTNVLQRTGEKL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1115 758 Pfam GAF domain 184 332 IPR003018 GO:0005515
Pvu6g1115 758 Gene3D - 432 612 IPR036890 -
Pvu6g1115 758 CDD HisKA 367 427 IPR003661 GO:0000155|GO:0007165
Pvu6g1115 758 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Pvu6g1115 758 SUPERFAMILY GAF domain-like 185 335 - -
Pvu6g1115 758 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 751 - -
Pvu6g1115 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 433 IPR036097 GO:0000155|GO:0007165
Pvu6g1115 758 Coils Coil 744 758 - -
Pvu6g1115 758 SUPERFAMILY CheY-like 628 753 IPR011006 -
Pvu6g1115 758 CDD REC_ETR-like 632 747 - -
Pvu6g1115 758 CDD HATPase_ETR2_ERS2-EIN4-like 474 606 - -
Pvu6g1115 758 Coils Coil 341 368 - -
Pvu6g1115 758 Gene3D - 173 331 IPR029016 -
Pvu6g1115 758 SMART REC_2 632 747 IPR001789 GO:0000160
Pvu6g1115 758 Pfam Response regulator receiver domain 634 745 IPR001789 GO:0000160
Pvu6g1115 758 Gene3D - 332 429 - -
Pvu6g1115 758 ProSiteProfiles Histidine kinase domain profile. 375 612 IPR005467 -
Pvu6g1115 758 SMART gaf_1 182 342 IPR003018 GO:0005515
Pvu6g1115 758 PANTHER ETHYLENE RECEPTOR 5 751 - -
Pvu6g1115 758 Gene3D - 632 757 - -
Pvu6g1115 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Pvu6g1115 758 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1115 Pvu-Chr6 22278762 22284746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1115 22 756 Miscellaneous Gene Families AT3G04580 61.044 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu6g1115 GAF 5.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1115 K14509 - gmx:100805023 1316.21