Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1113 ATGACTTCCTCACTCACGTGTCAGACCCAATACTCCCTTCCTTTCAACGAAAATGACTCTCAAGAAATGCCCCTTTACCAAGTTCTGGCTCAGGCTGCTGCAATTTCCTCGGAAACAATAACATCATCGTTATCTTCGGTGTCCCATGCTTCAACTGTTGCCGAAGCAGAAGCTTCGGTTTCGTACAGAGGGGTTCGGAGGAGGCCATGGGGGAAGTACGCGGCAGAGATAAGGGACTCCACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCTTTCGCCATGCGAGGCTCCAAGGCAGTGCTCAACTTCCCAGCTGAGATTGTTTGGCAATCGCTTCGGAAGATGGAGTATGGTTTTGACCAAGGGTCTTCCCCCGTTCTGGAGTTGAAAAAGAGACACTCCATAAATAGAAAATGGGAGAGGAAGAAGCTGAAGAAGAATGTGCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTTTCGCAACATGTGATGGTGTTGGAGGACTTAGGCACAGAGTATTTGGAACATCTTCTTACTCTCTCCCAGGATATGAATGTTTCTTAG 612 0.4918 MTSSLTCQTQYSLPFNENDSQEMPLYQVLAQAAAISSETITSSLSSVSHASTVAEAEASVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSKAVLNFPAEIVWQSLRKMEYGFDQGSSPVLELKKRHSINRKWERKKLKKNVQEEEEEEEEEGVSQHVMVLEDLGTEYLEHLLTLSQDMNVS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1113 203 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Pvu6g1113 203 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Pvu6g1113 203 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Pvu6g1113 203 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Pvu6g1113 203 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Pvu6g1113 203 PANTHER DNA-BINDING DOMAIN 8 196 IPR044808 GO:0003700|GO:0009873
Pvu6g1113 203 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Pvu6g1113 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 8 196 - -
Pvu6g1113 203 Coils Coil 151 176 - -
Pvu6g1113 203 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Pvu6g1113 203 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1113 Pvu-Chr6 22259920 22260531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1113 13 199 AP2-EREBP Transcription Factor Family AT3G23240 51.872 3.72e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu6g1113 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1113 K14516 - gmx:100787732 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1113 6 22259920 22260531 Pvu7g1310 7 27274067 27275018 ECH
Pvu1g1662 1 41988449 41989014 Pvu6g1113 6 22259920 22260531 ECH
Pvu7g1994 7 43194246 43194881 Pvu6g1113 6 22259920 22260531 ECH
Pvu6g1113 6 22259920 22260531 Pvu6g1113 6 22259920 22260531 ECH
Pvu6g1113 6 22259920 22260531 Pvu7g1995 7 43227132 43227770 PCT