Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1104 ATGATGAAGACTCCTTGCTGTGAGAGAATGGGATTGAAGAAGGGACCTTGGACTGTGGAAGAAGATCAGATATTGGTTTCTCATATTCAACGATATGGCCATGGCAACTGGCGAGCGCTTCCTAAACAAGCTGGATTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAGAGCTGCATGAAATTCTTGGAAATAGGTGGTCTGCTATAGCGACAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGGTCCAAAGAGGTGGAGTGCACTTAAATGGCAATGCTTCATCACATATCTTGCAAGAGGCACAACCAAATGGTTCATCAAGTTCAAGTGATGCTTCTAGTGTCTATGGAAATGTAATGCTTGCCAATTATGGTTTACCTTCAAGGAAGAATCCAATCAATCCACCTATTGTAGGTGCAGGATTTTATGGTGCAGTCTCCTCAGATACTTTTGGGGAAACTGTGGACAATCATGGTTCTTGTCAGCTAAGTGAAGAAATGGAATTTTGGTACAATATATTCATCAAATCAGGGCAAACTTCATGA 648 0.4151 MMKTPCCERMGLKKGPWTVEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILELHEILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRVQRGGVHLNGNASSHILQEAQPNGSSSSSDASSVYGNVMLANYGLPSRKNPINPPIVGAGFYGAVSSDTFGETVDNHGSCQLSEEMEFWYNIFIKSGQTS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1104 215 CDD SANT 69 112 IPR001005 -
Pvu6g1104 215 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu6g1104 215 CDD SANT 16 61 IPR001005 -
Pvu6g1104 215 Gene3D - 13 66 - -
Pvu6g1104 215 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu6g1104 215 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Pvu6g1104 215 SMART sant 13 63 IPR001005 -
Pvu6g1104 215 SMART sant 66 114 IPR001005 -
Pvu6g1104 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu6g1104 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu6g1104 215 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu6g1104 215 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu6g1104 215 Gene3D - 69 116 - -
Pvu6g1104 215 PANTHER MYB TRANSCRIPTION FACTOR 1 213 - -
Pvu6g1104 215 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1104 Pvu-Chr6 22149755 22150983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1104 1 208 MYB Transcription Factor Family AT2G31180 45.726 3.91e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g1104 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1104 K09422 - gmx:102663040 369.392