Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1103 ATGGCCAAGAACATAGAAAAAACTACAGTGGTTTTTTTAGAAAAAGAAGATGAAGAAGAACCCGCCGAAGAATGGTGTTTTGGATGCAAGGATGGTGGGCAAATGATCATCTGTGATCACCCGAATTGTGGGAAAGTTTATCACCCTGATTGTGTTGGAAAGGATGCAGCTTTTTTTGACATTGTAAAATCTTGGTTTTGTGGTAGACATGCTTGTTTCCAATGCAATGAACCTTCAAAGTTTTATTGCCTTGCTTGTCCAATTGGTGTGTGCAGAAAATGCTTTGCCGCCTCAGAAGAATTTACTGTTGTTAGAGGGGTAAAAGGCTTATGCATGGACTGTTGGAAGCTAATGGAGATTGTGGAACAAAATTTAGACCATGATTCAAATGGGAACAAAATAGCCTTGAATGACAGGGAAACATACGAATGCCTATTCAAGGAATATTGGGAAATTATTAAGGCTAAAGAAAGATTGACCAGGGAGGACGTTTTTTCTGCACAGCCAGATTTCAGAACTTGTAAACCTTTTCAATATCATAAAAAAAATAGGACAGGTGAAGAGGAAGAAGTACAAAATGAGCTAAAAGAAGGATTGACAAGTGATGATATTTTTTCTGCAAGCCTGGGCTACAAAAAGTTTGAACCTTTATTACATCATAAAAAAGTTAGTAAAACTGAAGAAGAAGTACAGAATGAGGTAAAAGAAGGATTGACTGGTGATGATACTTTTGCTGCACAGACTGGCTTCAAAAAGTTTAAAGGTTTTCTGCACCATAAAAAAATTAGCAAAGTAGAAGAAGAAGAAAGTGAAGAAGAAGAAAGTGAAGAAGAAGAAGGAGAAGCAGAAGAAAGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGAAGAAGAAGAAAATGATTTGAGGTCATGGACTAGTGATGAAGATAGTAAGTCAGCTCTTCAGTCAGCCAAACGGAAAAGGAGCAATTCAGAGGAGTTTGTGGGATGGGGATCAAAACCTCTCATTAGCTTCCTTGCATCCATTGGGAAACATGAAACTGAACCATTAACCAAATGGGCTGTCAATTCTCTCATACATGAATACATCAATGAGAAAAGTCTTGACCACCCTAGAGACAAGGGGAAGTTCCTCCCTGATGAAAGGTTGTTTCCTGTGTTTAGAAAGAAAGTTGTCTCAAAAAGGGATATATATTATCTACTTGGGTTTCACTTTGCCAAGAAAATGGATGATCCATCTGAGGATAAAAACAATGTTCAAATCAGTAACAGTTCACTGGACAAGCATCCCAATGCTAAGAAAATATGTGGAAGCAGATTGTCAAGCTTAATTGGAAAACCTCCATTGAGAAAGGGGGATTATTTTATAAAGCATAGCCAATTTGCATCCATTAATGCCTATAATATAAAGCTCATTTATCTAAAACGAAGTTTGGTGCTAGAGTTATCAAAACAGCCTGAAAGCTTTTTGGGTAAGATTGTTGGAACTTTTGTCCGAGCTAGAATAGATTCCAATGATTCTAGACAAGGGAAGTCTTACCATCTGGTGAGAGTTTTAGGTGTTGAATTTGATGAAATGCCAAATAGAATTCTCTTGCAAGTTTCCATAATGCCTAAGGCCATTCCCATTTCAGAGCTATCCGATGAAGATTTCACAGAGCAAGAATGTGAGGATTTGCAGCAAAAAGTGAAAACCAGCTTGCTCCCAAAATTAACTGTTGCTGAGCTTCAAGAAAAGGCTGAAAGTCTTCACGAAGATATAACAAAACATAGCATCACAACTCGCCTTGTCCATTTGCAAAATCAAATTGACCGAGCAAATCTTAGAGGACGAACTAGAGAAAAAATTGCATTACTTGAGGAAAGAGAACGACTTGAACAATCATGGAAGCAAGAACAACTCTTAAAGAGCGTACCTTCAGTTCGTGCAGAGCTGATTGAATCAAAATGTGGTGATTCTGAAGATGAACAAGATACAAATACACAGCTCTAG 1998 0.3764 MAKNIEKTTVVFLEKEDEEEPAEEWCFGCKDGGQMIICDHPNCGKVYHPDCVGKDAAFFDIVKSWFCGRHACFQCNEPSKFYCLACPIGVCRKCFAASEEFTVVRGVKGLCMDCWKLMEIVEQNLDHDSNGNKIALNDRETYECLFKEYWEIIKAKERLTREDVFSAQPDFRTCKPFQYHKKNRTGEEEEVQNELKEGLTSDDIFSASLGYKKFEPLLHHKKVSKTEEEVQNEVKEGLTGDDTFAAQTGFKKFKGFLHHKKISKVEEEESEEEESEEEEGEAEESEEEEEEEEEESEEEENDLRSWTSDEDSKSALQSAKRKRSNSEEFVGWGSKPLISFLASIGKHETEPLTKWAVNSLIHEYINEKSLDHPRDKGKFLPDERLFPVFRKKVVSKRDIYYLLGFHFAKKMDDPSEDKNNVQISNSSLDKHPNAKKICGSRLSSLIGKPPLRKGDYFIKHSQFASINAYNIKLIYLKRSLVLELSKQPESFLGKIVGTFVRARIDSNDSRQGKSYHLVRVLGVEFDEMPNRILLQVSIMPKAIPISELSDEDFTEQECEDLQQKVKTSLLPKLTVAELQEKAESLHEDITKHSITTRLVHLQNQIDRANLRGRTREKIALLEERERLEQSWKQEQLLKSVPSVRAELIESKCGDSEDEQDTNTQL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1103 665 MobiDBLite consensus disorder prediction 306 320 - -
Pvu6g1103 665 SUPERFAMILY Plus3-like 468 588 IPR036128 GO:0003677
Pvu6g1103 665 SUPERFAMILY SWIB/MDM2 domain 322 411 IPR036885 -
Pvu6g1103 665 ProSitePatterns Zinc finger RanBP2-type signature. 65 86 IPR001876 -
Pvu6g1103 665 SMART PHD_3 25 71 IPR001965 -
Pvu6g1103 665 PANTHER OS01G0884500 PROTEIN 234 658 IPR045894 -
Pvu6g1103 665 PANTHER OS01G0884500 PROTEIN 12 190 IPR045894 -
Pvu6g1103 665 SMART rtf1 465 567 IPR004343 GO:0003677
Pvu6g1103 665 Gene3D SWIB/MDM2 domain 318 417 IPR036885 -
Pvu6g1103 665 MobiDBLite consensus disorder prediction 268 305 - -
Pvu6g1103 665 SUPERFAMILY FYVE/PHD zinc finger 16 80 IPR011011 -
Pvu6g1103 665 ProSitePatterns Zinc finger PHD-type signature. 26 86 IPR019786 -
Pvu6g1103 665 CDD SWIB-MDM2_like 332 407 - -
Pvu6g1103 665 Pfam Plus-3 domain 470 565 IPR004343 GO:0003677
Pvu6g1103 665 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 234 658 - -
Pvu6g1103 665 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 12 190 - -
Pvu6g1103 665 Coils Coil 258 309 - -
Pvu6g1103 665 ProSiteProfiles SWIB/MDM2 domain profile. 326 409 IPR003121 -
Pvu6g1103 665 CDD PHD5_NSD 25 70 - -
Pvu6g1103 665 Pfam SWIB/MDM2 domain 342 405 IPR003121 -
Pvu6g1103 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 116 IPR013083 -
Pvu6g1103 665 Gene3D - 467 587 IPR036128 GO:0003677
Pvu6g1103 665 ProSiteProfiles Plus3 domain profile. 465 590 IPR004343 GO:0003677
Pvu6g1103 665 Coils Coil 575 595 - -
Pvu6g1103 665 MobiDBLite consensus disorder prediction 263 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1103 Pvu-Chr6 22141255 22145643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1103 13 77 PHD Transcription Factor Family AT3G14980 33.846 7.71e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu6g1103 Plus-3 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1103 - - pvu:PHAVU_006G105100g 1268.83