Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1099 ATGTCTTCATCTTCTCGTGTTCTTCCCACTCCCCTTGAAAACAAGTATATGAAACCCCCAGATTCTTGTCATCTTTCACCTGCCAGTGATCTGGCTGCGAATTCTGTCTCATCAAATTCAGTCAGAAGTGCTGCGAATCCTGATGGCACCCTTTTTTCCTATGCTTCACAGCATGATAAGCAATATGAAGATCCCCCCTTTGTTCCTCAGACATTGGGTGACAATGTGTCTTCTGAAATACACTCAACAACATTCATTTCTCACCCTCATGAAAACGAAGATATTACCTGGGGACCAGATCCATTTCAGGATATTATTGGGTTTCCTGAAAATATTTCTGCCCAGCATGATCAGGTGGTAGAGAATGGCTGTTACATAAATGATGATAATGTCAAAAGAACCGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGACAATGTAGCAGAACCAAAACCAAAGGTTCCTCAGCTGCTTGATATACCATCTGGAGAAGTTGTTGGCAATTCAGCAGCAACCACACCACAGACTAAGACTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTCAATCAACTTGGTGGTAGTGAGAGGGCTACTCCGAAGGGTGTGTTGAATGTAATGAAAGTTGATGGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATACAAACCAGAGCCATCCGAAGGAACGTCTGAGAAAAAGGCGACTCCAATAGAAGAAATGAAATCTCTAGACTTAAAAACGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGAACTCCAGAAGCGACTTCACGAGCAACTTGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGAAAACGTCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGTGACAAGAAGGTTAATGGCTCCTCCGATGAGGCTGCCACGGCCACCCCTGCCGCTCCATCAGACAGTGTGCTTCCTTCTTCTCCTCCAGTAGAAACCTCAAATGAGGGACGTGAGAAAAGCATGGAAGAAGAGAAGGAAGAAAGCACAAAGCAAAAGGCAAGGGAAGGTGAAGAAGTAATAAATGAAGATGAAGATGAAGTTGCACCAGCTACAAAGAGGGTGAAAAGTTCATAA 1212 0.4348 MSSSSRVLPTPLENKYMKPPDSCHLSPASDLAANSVSSNSVRSAANPDGTLFSYASQHDKQYEDPPFVPQTLGDNVSSEIHSTTFISHPHENEDITWGPDPFQDIIGFPENISAQHDQVVENGCYINDDNVKRTDFGEWVDQLMSIDDSLHPNWSQLLGDDNVAEPKPKVPQLLDIPSGEVVGNSAATTPQTKTRMRWTPELHEAFVEAVNQLGGSERATPKGVLNVMKVDGLTIYHVKSHLQKYRTARYKPEPSEGTSEKKATPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDKKVNGSSDEAATATPAAPSDSVLPSSPPVETSNEGREKSMEEEKEESTKQKAREGEEVINEDEDEVAPATKRVKSS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1099 403 MobiDBLite consensus disorder prediction 1 30 - -
Pvu6g1099 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Pvu6g1099 403 Pfam Myb-like DNA-binding domain 195 246 IPR001005 -
Pvu6g1099 403 Pfam MYB-CC type transfactor, LHEQLE motif 280 324 IPR025756 -
Pvu6g1099 403 MobiDBLite consensus disorder prediction 361 384 - -
Pvu6g1099 403 MobiDBLite consensus disorder prediction 334 360 - -
Pvu6g1099 403 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 403 IPR044848 GO:0003700
Pvu6g1099 403 Gene3D - 192 251 - -
Pvu6g1099 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 247 IPR006447 GO:0003677
Pvu6g1099 403 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 403 - -
Pvu6g1099 403 MobiDBLite consensus disorder prediction 323 403 - -
Pvu6g1099 403 Coils Coil 281 301 - -
Pvu6g1099 403 MobiDBLite consensus disorder prediction 247 270 - -
Pvu6g1099 403 SUPERFAMILY Homeodomain-like 191 247 IPR009057 -
Pvu6g1099 403 Coils Coil 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1099 Pvu-Chr6 22094653 22099268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1099 79 346 G2-like Transcription Factor Family AT3G04450 51.034 9.69e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu6g1099 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1099 - - gmx:100803267 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1099 6 22094653 22099268 Pvu6g1099 6 22094653 22099268 ECH
Pvu6g1099 6 22094653 22099268 Pvu7g1954 7 42632675 42642148 PCT