LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g1097	ATGGCCCCTACTGGAAGAGCTGAGAAGGCCTTTAGCTTTATGATGACCTTAGGAATTTCTATGGAGGAGGTGAAGCCAGTGTTGATAAAGCTACTAAGAGTTTATGAAGGAAATTGGGAACTTATTGAAGATGATACTTATCGAACACTGGTAGATGCGTACTTTGATTTTGACAAAGACAAGGTAGTTGAAGGTGAGAGAAAACCTAATGGCAGTGGTTATGGTGGACAAAACTCAACAGGGGAACCGTCCTTGGTAGATAGTGACGACTGTCATTTATTAACCATGGACAGCTCAAGCAAAATGTTAAGTCTAGAAGACAGAAAAATATCATCAAAGAACTTTGAGCGGAAAAACATTAAGCCATCTCAAACAATAACGGAAGATGTTAAGCCCGAAACCAGTTCACAGGCATCACATTCAACGTTCAGTGAGGTAAAAAAGATCTCTAATTTACCTCGTGGGGCAGCTAAAGATGGAGAATCTTACCCTGAGAAAGCTTCATCTGCAGGGCCCCGTGGCCAGTTCGAGAATAACACTGTGAAGCCAAGAGCTAAGAAACCCAAGTTACTCACTTCGACGAATCATAATGGAGATATTTGTGTTAAACCTCTGTCAACTCAGGATCAGGTTTTGCAGAGTAATATTACGATCGCTAGTTCTTCACGTCTTGAAGAAGTTAAAATATCTTTGAATTGTGACTCAGCCTTGTCAGGACTAAACTTCAGTATTCCTGATTTGGACGTTGTTATGAGGTTCATGGACAGGAAGTACCTTAGCTCTTGCAAAACTGTTGACCCTCCATTTTCTACGGCAAAGCTATTGAATGATCTTTGTAGTATTTTTCTCAAGTTGGGGCTTCGAAAGGGATCAAATTCCAACCAGGTCAATTCGCATTCACAACAACACGTTATTCAAGGAGAAAGGAAACCCTTTAATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAATTTGGTAGTGACGCCTTGCCAAAGTTTAATTACATACCATACAATACAATATATCAAAGTGCTATTGTAAGTATTTCTTTAGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCATCATCATTGCCTTGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAAAAGCTTGCGTGACTATGAAGAATGAACCCCAAGAACATCATTATGTGTACTGTCAAGAGTGCCCTTTAGAGAAGTCCAAGAACGAGTACATGCCTGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTCACATGCTTTGTGGGAATCGATTAGTGCAACGAGGTATTACATGCAAATTGCAGGTGTTCTTAACTCGACAAGGTAAAGGTTGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTATATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATAATGGAAGAGAGTTGGAATGAAAGACATACATATCCTTTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCGTCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAACAAGAATGTGAGTGCGTATGAGGAATTGACATGGGATTATGGTATTGATTTTGCTGATGAAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCACCTTATGCCGTGATAAGAAACAAAAAGGGAAAGGAAAAATGAAAAAACCAAGTTCATGA	1938	0.3958	MAPTGRAEKAFSFMMTLGISMEEVKPVLIKLLRVYEGNWELIEDDTYRTLVDAYFDFDKDKVVEGERKPNGSGYGGQNSTGEPSLVDSDDCHLLTMDSSSKMLSLEDRKISSKNFERKNIKPSQTITEDVKPETSSQASHSTFSEVKKISNLPRGAAKDGESYPEKASSAGPRGQFENNTVKPRAKKPKLLTSTNHNGDICVKPLSTQDQVLQSNITIASSSRLEEVKISLNCDSALSGLNFSIPDLDVVMRFMDRKYLSSCKTVDPPFSTAKLLNDLCSIFLKLGLRKGSNSNQVNSHSQQHVIQGERKPFNFISDITKGSEKVKISLIDEFGSDALPKFNYIPYNTIYQSAIVSISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLKACVTMKNEPQEHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCHMLCGNRLVQRGITCKLQVFLTRQGKGWGLRTLEDLPKGTFICEYVGEILTNMELYDRIMEESWNERHTYPLTLDADWGSEKGLKDEEALCLDATYNGNVGRFVNHRCYDANLIDIPVEIESPDHHYYHLAFFTNKNVSAYEELTWDYGIDFADEDHPIKAFRCSCGSTLCRDKKQKGKGKMKKPSS*	646

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu6g1097	645	CDD	SET_SETDB-like	339	607	-	-
Pvu6g1097	645	ProSiteProfiles	SET domain profile.	473	607	IPR001214	GO:0005515
Pvu6g1097	645	SMART	set_7	473	613	IPR001214	GO:0005515
Pvu6g1097	645	MobiDBLite	consensus disorder prediction	114	193	-	-
Pvu6g1097	645	Pfam	SET domain	485	607	IPR001214	GO:0005515
Pvu6g1097	645	Pfam	Ubiquitin-binding WIYLD domain	5	56	IPR018848	GO:0018024
Pvu6g1097	645	SMART	preset_2	315	457	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
Pvu6g1097	645	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	645	IPR025776	-
Pvu6g1097	645	MobiDBLite	consensus disorder prediction	65	90	-	-
Pvu6g1097	645	Pfam	Pre-SET motif	318	465	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g1097	Pvu-Chr6	22076444	22083016	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g1097	314	630	Su(var)3-9 homologs	AT5G04940	29.377	2.74e-31	127

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pvu6g1097		Pre-SET	1.6e-15	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g1097	-		-	vun:114188074	1031.17

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g1097	6	22076444	22083016	Pvu7g1950	7	42607413	42616051	PCT

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