Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1097 ATGGCCCCTACTGGAAGAGCTGAGAAGGCCTTTAGCTTTATGATGACCTTAGGAATTTCTATGGAGGAGGTGAAGCCAGTGTTGATAAAGCTACTAAGAGTTTATGAAGGAAATTGGGAACTTATTGAAGATGATACTTATCGAACACTGGTAGATGCGTACTTTGATTTTGACAAAGACAAGGTAGTTGAAGGTGAGAGAAAACCTAATGGCAGTGGTTATGGTGGACAAAACTCAACAGGGGAACCGTCCTTGGTAGATAGTGACGACTGTCATTTATTAACCATGGACAGCTCAAGCAAAATGTTAAGTCTAGAAGACAGAAAAATATCATCAAAGAACTTTGAGCGGAAAAACATTAAGCCATCTCAAACAATAACGGAAGATGTTAAGCCCGAAACCAGTTCACAGGCATCACATTCAACGTTCAGTGAGGTAAAAAAGATCTCTAATTTACCTCGTGGGGCAGCTAAAGATGGAGAATCTTACCCTGAGAAAGCTTCATCTGCAGGGCCCCGTGGCCAGTTCGAGAATAACACTGTGAAGCCAAGAGCTAAGAAACCCAAGTTACTCACTTCGACGAATCATAATGGAGATATTTGTGTTAAACCTCTGTCAACTCAGGATCAGGTTTTGCAGAGTAATATTACGATCGCTAGTTCTTCACGTCTTGAAGAAGTTAAAATATCTTTGAATTGTGACTCAGCCTTGTCAGGACTAAACTTCAGTATTCCTGATTTGGACGTTGTTATGAGGTTCATGGACAGGAAGTACCTTAGCTCTTGCAAAACTGTTGACCCTCCATTTTCTACGGCAAAGCTATTGAATGATCTTTGTAGTATTTTTCTCAAGTTGGGGCTTCGAAAGGGATCAAATTCCAACCAGGTCAATTCGCATTCACAACAACACGTTATTCAAGGAGAAAGGAAACCCTTTAATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAATTTGGTAGTGACGCCTTGCCAAAGTTTAATTACATACCATACAATACAATATATCAAAGTGCTATTGTAAGTATTTCTTTAGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCATCATCATTGCCTTGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAAAAGCTTGCGTGACTATGAAGAATGAACCCCAAGAACATCATTATGTGTACTGTCAAGAGTGCCCTTTAGAGAAGTCCAAGAACGAGTACATGCCTGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTCACATGCTTTGTGGGAATCGATTAGTGCAACGAGGTATTACATGCAAATTGCAGGTGTTCTTAACTCGACAAGGTAAAGGTTGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTATATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATAATGGAAGAGAGTTGGAATGAAAGACATACATATCCTTTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCGTCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATCTTGCCTTCTTTACCAACAAGAATGTGAGTGCGTATGAGGAATTGACATGGGATTATGGTATTGATTTTGCTGATGAAGATCATCCTATTAAAGCATTTCGGTGTTCTTGTGGAAGCACCTTATGCCGTGATAAGAAACAAAAAGGGAAAGGAAAAATGAAAAAACCAAGTTCATGA 1938 0.3958 MAPTGRAEKAFSFMMTLGISMEEVKPVLIKLLRVYEGNWELIEDDTYRTLVDAYFDFDKDKVVEGERKPNGSGYGGQNSTGEPSLVDSDDCHLLTMDSSSKMLSLEDRKISSKNFERKNIKPSQTITEDVKPETSSQASHSTFSEVKKISNLPRGAAKDGESYPEKASSAGPRGQFENNTVKPRAKKPKLLTSTNHNGDICVKPLSTQDQVLQSNITIASSSRLEEVKISLNCDSALSGLNFSIPDLDVVMRFMDRKYLSSCKTVDPPFSTAKLLNDLCSIFLKLGLRKGSNSNQVNSHSQQHVIQGERKPFNFISDITKGSEKVKISLIDEFGSDALPKFNYIPYNTIYQSAIVSISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLKACVTMKNEPQEHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCHMLCGNRLVQRGITCKLQVFLTRQGKGWGLRTLEDLPKGTFICEYVGEILTNMELYDRIMEESWNERHTYPLTLDADWGSEKGLKDEEALCLDATYNGNVGRFVNHRCYDANLIDIPVEIESPDHHYYHLAFFTNKNVSAYEELTWDYGIDFADEDHPIKAFRCSCGSTLCRDKKQKGKGKMKKPSS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1097 645 CDD SET_SETDB-like 339 607 - -
Pvu6g1097 645 ProSiteProfiles SET domain profile. 473 607 IPR001214 GO:0005515
Pvu6g1097 645 SMART set_7 473 613 IPR001214 GO:0005515
Pvu6g1097 645 MobiDBLite consensus disorder prediction 114 193 - -
Pvu6g1097 645 Pfam SET domain 485 607 IPR001214 GO:0005515
Pvu6g1097 645 Pfam Ubiquitin-binding WIYLD domain 5 56 IPR018848 GO:0018024
Pvu6g1097 645 SMART preset_2 315 457 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu6g1097 645 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 645 IPR025776 -
Pvu6g1097 645 MobiDBLite consensus disorder prediction 65 90 - -
Pvu6g1097 645 Pfam Pre-SET motif 318 465 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu6g1097 645 ProSiteProfiles Pre-SET domain profile. 367 470 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu6g1097 645 Gene3D - 1 60 IPR043017 -
Pvu6g1097 645 SUPERFAMILY SET domain 325 630 IPR046341 -
Pvu6g1097 645 Gene3D SET domain 318 632 IPR046341 -
Pvu6g1097 645 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 640 - -
Pvu6g1097 645 MobiDBLite consensus disorder prediction 117 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1097 Pvu-Chr6 22076444 22083016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1097 314 630 Su(var)3-9 homologs AT5G04940 29.377 2.74e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu6g1097 Pre-SET 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1097 - - vun:114188074 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1097 6 22076444 22083016 Pvu7g1950 7 42607413 42616051 PCT