Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1071 ATGACTACTGCTATGGAGGCAGAGCGTGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGTTGCCGCTGAGTGCAAACGAGACCGAGTCCACGCTCATCAGAAACACTTCCTCTGCTTCCTTCACTGGGAAGAGAGGGTTTTCCGATACAACCACTGCTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCACACCCTCTTCCGACATGGCCAAAGACAACACCGCTTCTGCTGCTGCCAACACTACTACACCCTCTTCTCCTCCTGTTAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATTCCGAAAGAACATAGTTAACAATAATGTTCAAAAGAGCAACAACAAAGAGGAGGTACAAGGTGGTACAAGTGGCAGGAACCACGGGAACACGGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCCTATCTACGTAAGGTAGATTTGAAGGTGTACAAGAGCTATCAAGAGCTGTCGGATTCACTGGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGCGAATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAGTTGATTGATTTTCTCAACGGCTCTGATTATGTACCAACCTATGAAGACAAAGATGGAGACTGGATGCTCGTGGGTGACGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTTGCACCCAGAGCAGTGGAAAAGCGCAAGAACAGAAGCTAG 819 0.4896 MTTAMEAERDKYKMIDFEETELRLGLPLSANETESTLIRNTSSASFTGKRGFSDTTTASVDLKLNLSSTSNNVSATPSSDMAKDNTASAAANTTTPSSPPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNNVQKSNNKEEVQGGTSGRNHGNTGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCESQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKRKNRS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1071 272 MobiDBLite consensus disorder prediction 68 99 - -
Pvu6g1071 272 Pfam AUX/IAA family 19 263 IPR033389 -
Pvu6g1071 272 Gene3D - 149 266 - -
Pvu6g1071 272 ProSiteProfiles PB1 domain profile. 154 254 IPR000270 GO:0005515
Pvu6g1071 272 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 265 - -
Pvu6g1071 272 MobiDBLite consensus disorder prediction 68 113 - -
Pvu6g1071 272 SUPERFAMILY CAD & PB1 domains 149 253 - -
Pvu6g1071 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 265 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1071 Pvu-Chr6 21893574 21896489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1071 138 262 B3 DNA Binding Superfamily AT4G23980 31.200 9.10e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pvu6g1071 AUX_IAA 5.8e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1071 K14484 - gmx:100796888 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1071 6 21893574 21896489 Pvu6g1071 6 21893574 21896489 ECH