Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1064 ATGGAGTTTCCTCCGAACCTTTTGCCAGACGAGGCGAGCCCAGAATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCAGCGACGGTGGTGGGTCTCCAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTTGTGAAAAAAACATGGGCCGTTAACTCCGCTTTCATGGCCTTCTACGCATTCCCGGCGGTTCTTCTCTGCTGGGTGGGGTGGGGTTTCCGCATGTCATTCGGCCAGAAAATGGTGTTCTTCTTGGGGAAACCAGGGGTGGCGCTGGACCAGGACTTTCTTCTTGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCTACCATGGTGTTTTTTCAGGGCGTGTTTGCGGGGATTACTTTGATCCTCATAGCTGGGGCGTTACTCGGGAGAATGAACATCCGTGCATGGATGCTGTTTGTTCCTCTTTGGCTTACTTGTTCCTACACAGTCACCGCGTTTAGCATTTGGTGCCCCGAAGGGTGGTTGGCGCAGCTTGGGGTTATTGATTTCTCTGGAGGTTATGTTATCCACCTCTCTGCCGGAGTAGCAGGTTACACTGCAGCTTATTGGGTGGGTCCGAGATGTGAGAAGGAGAGAGAAAGGTTTCCATCAAACAACATGATAGTAGGGCTTGCAGGCGCAGGCCTGCTGTGGATGGGTTGGAGTGGGTTCAACGGTGGAGGGCCGTTTGCGGTGAGCACGGTGGCGTCTCTGGCCGTCCTTAACACACACGTGTGTGCTGCTGCTAGCATCATGATGTGGGTTCTACTTGACACTTTCTACTTTGGTAAGCCCACCGTGTTCGGAGCCATACAAGGCATGATCACGGGCCTCGTTTGCATCACACCTGCCGCAGGAGTTGTACAGGGGTGGGCAGTGATCTTGATGGGTTTGATCTCGGGAAGCGTTCCCTGGTACACAATGATGATCCTCCATGACAAGGTACCTTTCTTGAACCAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGTGCTCTCGGCGGCATCCTCACCGGCCTCTTCGCCGTCCCTAAACTGTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTGGCCTATGGCCTCCAGAATGGTGCAACTGGAGCGGGTTTAAGACAAATGGGCATCCAAGTGGGGGCCATAGTTTTCGTGATCATCTTCAACTTCGTTACGACAAGCTTGATTTGCTTGCTGGTGGGAGCCATTGTACCTCTGAGGCTTCACACCGATGCGCTGCAAATGGGTGACAAGGCAGTGCATGGGGAAGAGGCTTTCGCTTTGAATGCTGACCCTGCCAAGTTTGAGAGCCTCAACCACAACAAAATTTACGATACACAAGACTTTTCCTTCGTTAGAGAGCCAAGAGCATTGACTCAACTTCAAATGGTATAA 1434 0.5279 MEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAVNSAFMAFYAFPAVLLCWVGWGFRMSFGQKMVFFLGKPGVALDQDFLLGKAFLGLFPTATMVFFQGVFAGITLILIAGALLGRMNIRAWMLFVPLWLTCSYTVTAFSIWCPEGWLAQLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKERERFPSNNMIVGLAGAGLLWMGWSGFNGGGPFAVSTVASLAVLNTHVCAAASIMMWVLLDTFYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAVILMGLISGSVPWYTMMILHDKVPFLNQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATGAGLRQMGIQVGAIVFVIIFNFVTTSLICLLVGAIVPLRLHTDALQMGDKAVHGEEAFALNADPAKFESLNHNKIYDTQDFSFVREPRALTQLQMV* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1064 477 PANTHER AMMONIUM TRANSPORTER MEP2 1 477 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pvu6g1064 477 SUPERFAMILY Ammonium transporter 16 421 - -
Pvu6g1064 477 PANTHER AMMONIUM TRANSPORTER 1 477 - -
Pvu6g1064 477 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Pvu6g1064 477 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005887
Pvu6g1064 477 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005887
Pvu6g1064 477 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005887
Pvu6g1064 477 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005887
Pvu6g1064 477 Gene3D Ammonium transporter AmtB like domains 8 456 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1064 Pvu-Chr6 21845309 21846962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1064 112 472 Inorganic Solute Cotransporters AT2G38290 53.425 2.10e-126 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1064 K03320 - gmx:100782944 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1064 6 21845309 21846962 Pvu6g1064 6 21845309 21846962 ECH