Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1056 ATGGAGAGCGCACGGCAAGCCCTGGAATTCTTCAAAGTTTTCCTCCTTAACAAAGCTTCTACCCAGTTGCAAATACCAACATCTTTCACTAAGTTTTTCAATGGAATCGCACCATGCAAGATCATTCTCATTGATCACGATGGAAAATGTTGGGATGTTAAGTTGGAGAAAATCGAGGGTCGTTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCCAAGGAGAAAAATTTAGAAGAAGGGGACTTTTTGGTTTTTCAGTATGATGGCATGTCTACCTTTAATGTGAAGATATTTTCGAAAACTGGGTGCAGGAAAGGGGCTACACCTCCAAGCCGCGAAAAAGTTGTTCCCATTGTGAATTTGGAAAAAGATTCTGATGAGTTTGGTAATAAAATCCAGAGCAATGGTATAGGGAAACGCTCACTGCCAAATACCAAATTAAAACTGGAATCAGTCTTAGAAGGGGCATGTCCATCTGAAGGAGCTCGGCGCAGATCAAAAAGACTGAAGGAAGAAAAAGATAAAAAAAATGACAAGAAACTTGCTCTGACTAAGCATGTTCCATTGCAGAATCCTCATTTTCAAATATATTTTGATACTCCCTGGAGACTGAAAAGAGTGGAAATTCCTAAAAAGCCGATTAAGGACATGGAAATCAAGTTGATCGGGAATATAATTCTCAGGGATGAGAATGACAGGTCGTGGCCGGTGTCGATCATTTCCACAGCGAATCAAGACCGTCGTTATTTGGGAAGTGGATGGTTGGATTTCAGGCAGTGCAACAACATTGAAGAAGGGTGTCAATGTGATTTTCAGTTTGTTGTTGACAAAGCAAACGTAGCCAAAGAACTGCTTGTGCGCGTACGTTCGAAGGGAGGACTGCAAATAGTTTAG 894 0.4105 MESARQALEFFKVFLLNKASTQLQIPTSFTKFFNGIAPCKIILIDHDGKCWDVKLEKIEGRLVFKNGWQQFAKEKNLEEGDFLVFQYDGMSTFNVKIFSKTGCRKGATPPSREKVVPIVNLEKDSDEFGNKIQSNGIGKRSLPNTKLKLESVLEGACPSEGARRRSKRLKEEKDKKNDKKLALTKHVPLQNPHFQIYFDTPWRLKRVEIPKKPIKDMEIKLIGNIILRDENDRSWPVSIISTANQDRRYLGSGWLDFRQCNNIEEGCQCDFQFVVDKANVAKELLVRVRSKGGLQIV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1056 297 ProSiteProfiles B3 DNA-binding domain profile. 192 292 IPR003340 GO:0003677
Pvu6g1056 297 CDD B3_DNA 203 266 IPR003340 GO:0003677
Pvu6g1056 297 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Pvu6g1056 297 SUPERFAMILY DNA-binding pseudobarrel domain 189 274 IPR015300 -
Pvu6g1056 297 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Pvu6g1056 297 PANTHER B3 DOMAIN-CONTAINING 5 279 - -
Pvu6g1056 297 CDD B3_DNA 10 99 IPR003340 GO:0003677
Pvu6g1056 297 Coils Coil 159 179 - -
Pvu6g1056 297 SMART B3_2 10 101 IPR003340 GO:0003677
Pvu6g1056 297 SMART B3_2 194 292 IPR003340 GO:0003677
Pvu6g1056 297 Pfam B3 DNA binding domain 10 100 IPR003340 GO:0003677
Pvu6g1056 297 Pfam B3 DNA binding domain 205 291 IPR003340 GO:0003677
Pvu6g1056 297 Gene3D - 3 103 IPR015300 -
Pvu6g1056 297 Gene3D - 187 288 IPR015300 -
Pvu6g1056 297 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 5 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1056 Pvu-Chr6 21793739 21795855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1056 1 290 B3 DNA Binding Superfamily AT5G66980 30.312 8.31e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu6g1056 B3 6.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1056 - - var:108345771 367.466