Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1053 ATGGAGCAGTATGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCTCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGAGCTCCTCTCCAAATTAAGAAACCCATTTATCGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGCGTCATGTTTCCTGAAGAGAAACTATGTAAGTGGCTTGTGCAGCTTCTTATGGCGCTTGATTACTTGCATGTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATGCGCCTTGGTGATTTTGGACTTGCTAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAATAAGTCGGTAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTGAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAATCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAACCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCCAGATTCCAACTACACGAAGAAAACTAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATAGGACTTTAAATCCCAGTGTATCAGGAGCGGAGCTAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTATTGGAGACAACCAGGATTTGAAGTCACTCGATAAGTCAGCTGTTCCGAGAGCTGTTTCAAGAACTTCTAGTAATGCCAGGACTCCTAGGTTAACTGCATCAAAAGCTTCTGCCAGCCCCAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAATATGAAACAACCTGTCCATACAACCCGCAGAGCGTCATTGCCATTCCCACAAAGTTGTGGCATTCAGCTTCCTCCTCGCAGGTCCAGTACTGGTTTACTTTGCCATGTAAATTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATAAATAGATCTTCACCAAACCCGGCCCAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTAATCAAAATGCAACAGCTGGAGCATCAAGCGACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACTTCGTCATTCCAACAAAGGGCAGAGGCATTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGATACGGAGAACTTGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGCTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAACCCACTTAA 1878 0.426 MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDMRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSVVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINNPRRSTLPGLWPDSNYTKKTRFLKSEDDRVSVSGYKWHSFSNDRTLNPSVSGAELDSLCSTLEIDCTPDNLNQRFAELSIGDNQDLKSLDKSAVPRAVSRTSSNARTPRLTASKASASPKKSMVSSKNHKTLPVSHNMKQPVHTTRRASLPFPQSCGIQLPPRRSSTGLLCHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNPAQGSSGSPPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSMLKKNNEDKSGSSNQNATAGASSDNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQPT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1053 625 MobiDBLite consensus disorder prediction 531 553 - -
Pvu6g1053 625 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1053 625 PANTHER SERINE/THREONINE-KINASE NEK4 1 610 - -
Pvu6g1053 625 MobiDBLite consensus disorder prediction 365 404 - -
Pvu6g1053 625 CDD STKc_Nek 3 258 - -
Pvu6g1053 625 MobiDBLite consensus disorder prediction 361 404 - -
Pvu6g1053 625 MobiDBLite consensus disorder prediction 528 553 - -
Pvu6g1053 625 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Pvu6g1053 625 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 610 - -
Pvu6g1053 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Pvu6g1053 625 ProSiteProfiles Protein kinase domain profile. 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1053 625 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Pvu6g1053 625 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Pvu6g1053 625 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pvu6g1053 625 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1053 Pvu-Chr6 21776176 21782311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1053 3 559 MAP Kinase Kinase Kinase AT3G13530 24.783 8.81e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pvu6g1053 Pkinase 2.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1053 K08857 - gmx:100796019 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1053 6 21776176 21782311 Pvu6g1053 6 21776176 21782311 ECH
Pvu6g1053 6 21776176 21782311 Pvu7g1920 7 42318515 42325721 PCT