Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1052 ATGTTCGATGGAGCAGCACCAGACCAGTTCCACCAATTCATATCACCAAGGACCACTCTTCCTCTCCACTTGTCTTTCCCTCTCCATGCCTCTTCAACTCCCTCAACTACCTTCCTACCCTTTCATCATCCCCATAACGTTCCTTCTCAATCTCCACACCACTTCCCACTCCAACCCAATCTCTTCCACCCAATATTGCACCCCCCTTCTCCCACCCACAAACATCAACCACCACACAAGCTTGCTTCAATCCACATTCAAACAGACCCAACACAATTACCAGACCTAACCGATTCCTGGACCAACGATGAACTCCTTGCACTTTTGAGAATCAGATCTAGCATGGAGAATTGGTTCCCGGAGCACACGTGGGACCATGTCTCAAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGACGAGAGTAGATATTTCGACAACATTAGCAACTACGGCAAGAACAATTACCGGTTCTTCAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATCCGAGTGGTGGTGGTGGTGGTGATTGTGATGGTGATGATGGGATTGTGAGAAGTGAAGAGACCCTCCACCTGGGAGGAGACAACATGGGCCATCAACAATGTGATCGAACGGAAGACAAGGTTGTGGTGGAAAAGTCAAAGCAGCGCAAGAGGAAGAGGCGTGATAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTTGTCAACAAGATGATGGCTCAACAAGAAGAGATTCACAACAGGCTCCTCGAGGACATGGTCAAAAGGGACCAAGAGAAGTTCACCAGAGAGGAAGCGTGGAAGAAGCAAGAGATGGAGAGAATGAACAAGGAGCTTGAGATCATGGCGCAGGAGCAAGCTATTGCAGGGGATAGACACGCCACCATAATTGAATTCTTAAAGAAATGTGCAACAACACCATCCCCTCCAACCCAGAATGGCAAGCACTACAGCACAGACGGTTCAAATCTTCCAAATCGCTCATTGCACACTCAAAACCCTAATACTCCTTCCAATGAAGACAACAACAATCTTGATCCAACACCTTCTCCTAAAATGCTTCTGAATCATGATCAAACTAAGTTGCAAGCAGAAAACCCTAGTTCAAGTGACACATTATTACAAGTTCCTTCCTCCTCCAACTCTTCCCCAACTCCCCACAACCCTAGTTCTTCCCTGAATAGCCATAATAACATGATTCCATTAGAGTCAAATTCAGTTTCCATTAGAGCCAGCAGTGAGAATTCGAAAGAGGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGTTGGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAATGAAGAGAAAGAAGGAAGCAATAAGGGTCCTCTGTGGGAGAGAATCTCTCAAGGGATGTCAGAGCTGGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAAGATGTTAACAAGAAAAGGTCCCTCAACTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCCTGTATGGTCAGGGAAAAATTGTGTCACAGTCTGAAAGGGAAGGGAACTACATGAGTCCAACCACGAATTCCGGCCAAATGCCACCGGATGATGATGAAGAAGTGGAAGCTGATGAGTCTTCTCATGTGGGGTAA 1707 0.464 MFDGAAPDQFHQFISPRTTLPLHLSFPLHASSTPSTTFLPFHHPHNVPSQSPHHFPLQPNLFHPILHPPSPTHKHQPPHKLASIHIQTDPTQLPDLTDSWTNDELLALLRIRSSMENWFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNISNYGKNNYRFFSELEELCQNPDPSGGGGGDCDGDDGIVRSEETLHLGGDNMGHQQCDRTEDKVVVEKSKQRKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNRLLEDMVKRDQEKFTREEAWKKQEMERMNKELEIMAQEQAIAGDRHATIIEFLKKCATTPSPPTQNGKHYSTDGSNLPNRSLHTQNPNTPSNEDNNNLDPTPSPKMLLNHDQTKLQAENPSSSDTLLQVPSSSNSSPTPHNPSSSLNSHNNMIPLESNSVSIRASSENSKEDVGRRWPRDEVLALINLRCTSVSNNNNEEKEGSNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVSQSEREGNYMSPTTNSGQMPPDDDEEVEADESSHVG* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1052 568 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 14 565 - -
Pvu6g1052 568 MobiDBLite consensus disorder prediction 317 412 - -
Pvu6g1052 568 MobiDBLite consensus disorder prediction 535 552 - -
Pvu6g1052 568 Gene3D - 436 501 - -
Pvu6g1052 568 Gene3D - 100 156 - -
Pvu6g1052 568 CDD GT1 434 503 - -
Pvu6g1052 568 Pfam Myb/SANT-like DNA-binding domain 98 174 IPR044822 -
Pvu6g1052 568 Pfam Myb/SANT-like DNA-binding domain 434 522 IPR044822 -
Pvu6g1052 568 MobiDBLite consensus disorder prediction 316 412 - -
Pvu6g1052 568 MobiDBLite consensus disorder prediction 203 229 - -
Pvu6g1052 568 ProSiteProfiles Myb-like domain profile. 435 496 IPR001005 -
Pvu6g1052 568 Coils Coil 281 301 - -
Pvu6g1052 568 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Pvu6g1052 568 PANTHER - 14 565 - -
Pvu6g1052 568 MobiDBLite consensus disorder prediction 535 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1052 Pvu-Chr6 21765985 21768805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1052 236 528 Trihelix Transcription Factor Family AT5G28300 49.000 2.21e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu6g1052 Myb_DNA-bind_4 7.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1052 - - vra:106774627 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1052 6 21765985 21768805 Pvu6g1052 6 21765985 21768805 ECH
Pvu6g1052 6 21765985 21768805 Pvu7g1919 7 42298155 42300917 PCT