Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1042 CCGCTGGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTACTGCAAGGGTTCCTGGACTACACCTCTCAGCGAGGATCCTCTCACCACAACGACACCGCTCTGTTCTACGACCAAATAAAGTCGAAGCTCCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCGTCAACAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCGCACGATCAAGCCACCTTCGAAATCTCTCGCAAGATCTGGACCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCGCCAACCCTAACCCTAGCCCCCACCCTAACCTTAATTTTAGCCCTGTAATTCACAAGAACGAAACGATTTCCAGGAATTCGGCGGAGAAAAAAACACCGAAACGCTCCAGACCTCGATCGGCGGTGAAAGTGGAGTCAATCGATGGATCGGCGTCGAACAGAGATCATAATTGTACTAGCAATGCTACAGCTACGGGTACTCCTACTGCTACCGCTACTAACACTACTGCTGCTGCTGCTACTGCTACTACTATTAACAATTGTAACAGTGGTTATAGCAAAAACATACCGAGTTTGATTGAGGAGACCGTGAGGAGTTGTTTGTCACCGGTGTTGAGGGAGTTGATGGGAGCGATGGGAGGGGGAGCGTTTGGGGGAAGAGGTTCGTTGAATTTAAACCCTTTGGCTTCGATGAATTTAAGTTATGGTGGTGGAGAATTGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAGTTGGAGGTGTACTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCCACCATGGAGGAGTTGCGGTCCAGTGGAGGAGGTGGAGGAGGAGGCTGA 939 0.5144 PLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVVNKIGSGKEFSFKSAHDQATFEISRKIWTSVAPIGENSLDDDEINPCANPNPSPHPNLNFSPVIHKNETISRNSAEKKTPKRSRPRSAVKVESIDGSASNRDHNCTSNATATGTPTATATNTTAAAATATTINNCNSGYSKNIPSLIEETVRSCLSPVLRELMGAMGGGAFGGRGSLNLNPLASMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKATMEELRSSGGGGGGG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1042 312 Coils Coil 57 77 - -
Pvu6g1042 312 MobiDBLite consensus disorder prediction 114 190 - -
Pvu6g1042 312 Coils Coil 281 301 - -
Pvu6g1042 312 PANTHER BNAANNG10740D PROTEIN 2 306 - -
Pvu6g1042 312 PANTHER BNAANNG10740D PROTEIN-RELATED 2 306 IPR007592 GO:0006355
Pvu6g1042 312 Pfam Protein of unknown function, DUF573 9 102 IPR007592 GO:0006355
Pvu6g1042 312 MobiDBLite consensus disorder prediction 144 163 - -
Pvu6g1042 312 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1042 Pvu-Chr6 21703321 21704621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1042 1 309 GeBP Transcription Factor Family AT5G28040 50.765 2.17e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Pvu6g1042 DUF573 6.2e-35 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1042 - - pvu:PHAVU_006G0994001 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1042 6 21703321 21704621 Pvu7g1907 7 42186380 42187456 PCT