Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1020 ATGGGGTGTGTGATAAGCAGGGAGGCGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGTTTTGGGTGGTCAGAGTAAGAGGAAGGTTGATGGAGTGTCTGGGAGCACGGGTGAGGTTGCGGTAGAGGTTGAGAATGGTGAGGAGAAAGAGAAGGAGAAGGGTGGTGGTGAAGGGGGGCAGCGGCCTCGGGGCGAAAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCTGCCCAAACATTTGCGGGGGGAGCAGGTTGCTGCTGGATGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACATAATGACGGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTGGAACCCGAGAGCGTAAAATTCATGGCGAGAGAGATTCTTATTTTGAGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCCGACTTTGGACTGGCTTCTATTTTTGATCCAAACCATAAACATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGTTGCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAGTTATTGGCTGGGAAACCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTGTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCACGAGACCCATACAAGAGGCGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATTCACTTCTTGCAATTGATCCCGTAGAACGGGAAACTGCCTCAGATGCTTTGAGAAGTGAGTTCTTTACGACAGAACCTTATGCTTGCGATCCTTCTAGTCTGCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGACTAAGAGCTGCTGGCAAAGCTCAGGTTGATGGTTCCAAGAAGCATCGGACTCGTGATCGTGGTATAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCAAATATTGATAGAAGACGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTCTGGGTTCTTCACATCATATTGATCCAGATACTGTTCCAACTGATGTCTCTTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCTGCTGACATTGGAGTGCCAAAGCGTAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATGCCCTCAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG 1737 0.4571 MGCVISREASKGIISEVKEEKVLGGQSKRKVDGVSGSTGEVAVEVENGEEKEKEKGGGEGGQRPRGERRRSKANPRLSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDIMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPRDPYKRRIRETFKDFPPSALPLIDSLLAIDPVERETASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQVDGSKKHRTRDRGIKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGDALDLSKPQKDALKDKIKGKKIIA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1020 578 SUPERFAMILY Protein kinase-like (PK-like) 111 407 IPR011009 -
Pvu6g1020 578 Gene3D Transferase(Phosphotransferase) domain 1 199 439 - -
Pvu6g1020 578 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1020 578 MobiDBLite consensus disorder prediction 44 74 - -
Pvu6g1020 578 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Pvu6g1020 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Pvu6g1020 578 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Pvu6g1020 578 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1020 578 MobiDBLite consensus disorder prediction 22 83 - -
Pvu6g1020 578 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g1020 578 CDD STKc_CDK9_like 116 400 - -
Pvu6g1020 578 PANTHER CELL DIVISION PROTEIN KINASE 43 555 - -
Pvu6g1020 578 PANTHER OS01G0367700 PROTEIN 43 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1020 Pvu-Chr6 21498293 21503090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1020 108 440 Core Cell Cycle Gene Families AT5G10270 53.295 7.55e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu6g1020 Pkinase 2.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1020 K08819 - gmx:100786837 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1020 6 21498293 21503090 Pvu7g1894 7 42039310 42047612 PCT