Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0981 ATGTGTTTGTCTGAGGGAGAGAGAGTAATGGCGTTAGAAGCAGTAGTATATCCCCAACCCCAGGACCCGTTTGGCTGTGCAATCAAAGACCCCTACAACTACAACAACTTGTTAGAAGCTGCTGCTGCAGGCAACTGGGGTTATGCAGATTTCACCCTTGAAAAAGAAGACCAAGCTTGTGTCACTTTTATGGACAACCAAACAGAGAATTGTCCCTATGGAGAATGGAACTCTTCTCCTCCATCCTTGTTGCCTCACAACATGAATGCATCAAATCCTCCTTCAGAAACCAGCAACACGCAGAACAACTTAGATAGTTCAGTTTCTACCCCAGCTCGTCCCAAGAGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTACCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAGGAAAAAGAGGGGAAACCTGATGTGCCCTTTTCTGAGTTCTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGTGAGCAAAAGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCCTGCACCTAAATGTTACCACCACCAAGGAAATTGTCCTCTATTCTCTCAGTGTCAAGGTTGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGCTGAATAGGATCCAACAAGAGTGA 966 0.4534 MCLSEGERVMALEAVVYPQPQDPFGCAIKDPYNYNNLLEAAAAGNWGYADFTLEKEDQACVTFMDNQTENCPYGEWNSSPPSLLPHNMNASNPPSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTSASGGCDNSAAMSEQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTKEIVLYSLSVKVEEDCKLGSVDEIAAAVYQMLNRIQQE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0981 321 MobiDBLite consensus disorder prediction 71 110 - -
Pvu6g0981 321 Gene3D - 115 196 IPR036638 GO:0046983
Pvu6g0981 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 194 IPR036638 GO:0046983
Pvu6g0981 321 PANTHER MAX DIMERIZATION, MAD 10 321 - -
Pvu6g0981 321 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 321 - -
Pvu6g0981 321 MobiDBLite consensus disorder prediction 71 129 - -
Pvu6g0981 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Pvu6g0981 321 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Pvu6g0981 321 SMART finulus 136 187 IPR011598 GO:0046983
Pvu6g0981 321 CDD bHLH_AtFAMA_like 133 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0981 Pvu-Chr6 21188367 21190356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0981 10 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.729 4.09e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g0981 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0981 - - gmx:100777413 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0981 6 21188367 21190356 Pvu6g0981 6 21188367 21190356 ECH
Pvu6g0981 6 21188367 21190356 Pvu7g1870 7 41864073 41865949 PCT