Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0980 ATGCTAGCTGTAGCACGTTTGCACTCTGACCAAGAACACTCTCTTTTAAATAACATAACAACACACACTTTCTCTCACTCTTCATTCCACAAAATGAAGAAACACCATCACCACGCAACCCTATTCCTGCTCCTCCAATTCCTGCTGCCGTCAATTCCAATCGCCGTCGCGCAGGGCCAGCCCCAGTCCGATCCAAACACCGACCCAAACCTAAACCGCTTCAACCCCTCTCTAGCCGCAATCATCGTCATACTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCATCTACGTACGCCACTGCGCCGATGCGCCTTCCAACAGCGTTAGGCCTCTCACCTCCGCACGCTCCAGAAGAGTCGCGCGTGGCCTTGACCCCGCCGTCATCCAAACCTTCCCCACCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAAGACTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAGGATACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTACCAACAGAATCCATGGATTCTGACGCCAACAACGGCGCCGACGCTGTTCCCGATCCTCAATCGTTAACGCCAGACGTTGAAGCCCAAAACGACGCAGTCGAAGCCGCGCCAGAGCAGCAAAACGCGGACTCTGACCGTTTCTTAACCGAACCGGAAGTTCTTTCTCTGGAAAAAACGCTGAACCGGAACCGCACACGTGGATCGCGGTCGAACCGGCTTCGCCGGTTCTCGAAGTCGCATTCCACCGGCCACTCGATCGTTCAACCGGGCGAAAACACTGACCGGTTCACTCTGAGACTTCCTTTGGAGGTTCGCAAGCAGGTAATAAACCGGCAATTGCATCGTGCAAGTAGCTTGATCGTGTTACCGAGAGAAGGTAGTTCGAGGCAGGGTTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAACAGTCAAGGCGGTTGGACCGGAGTTTGAAATCGGACCGGTGGATTTTCTCGATAGCTGCGCCGTTTTTCGCAAGGGCGCTGTCTATTAGATCCCCCAGGGTGCGGAATAACGACGTTGAAGGAACGTCGTCGTCTTCCACCGCGCCGATTATGCCGCGGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1218 0.5542 MLAVARLHSDQEHSLLNNITTHTFSHSSFHKMKKHHHHATLFLLLQFLLPSIPIAVAQGQPQSDPNTDPNLNRFNPSLAAIIVILVAALFVMAVFSIYVRHCADAPSNSVRPLTSARSRRVARGLDPAVIQTFPTLEYSEVKIHKIGKEDLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESMDSDANNGADAVPDPQSLTPDVEAQNDAVEAAPEQQNADSDRFLTEPEVLSLEKTLNRNRTRGSRSNRLRRFSKSHSTGHSIVQPGENTDRFTLRLPLEVRKQVINRQLHRASSLIVLPREGSSRQGYRTGGEGSSRGKQSRRLDRSLKSDRWIFSIAAPFFARALSIRSPRVRNNDVEGTSSSSTAPIMPRTAVDSARPPV* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0980 405 SMART ring_2 153 194 IPR001841 -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 321 347 - -
Pvu6g0980 405 SUPERFAMILY RING/U-box 145 201 - -
Pvu6g0980 405 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Pvu6g0980 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 201 IPR013083 -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 377 405 - -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 228 289 - -
Pvu6g0980 405 PANTHER RING FINGER DOMAIN-CONTAINING 32 345 - -
Pvu6g0980 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 345 - -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 204 223 - -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 264 278 - -
Pvu6g0980 405 CDD RING-H2_EL5_like 152 195 - -
Pvu6g0980 405 Pfam Ring finger domain 152 195 IPR001841 -
Pvu6g0980 405 MobiDBLite consensus disorder prediction 377 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0980 Pvu-Chr6 21163270 21165746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0980 32 390 Rapid Response to Elicitors AT3G05200 41.687 1.44e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0980 K10664 - gmx:100781706 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0980 6 21163270 21165746 Pvu6g0980 6 21163270 21165746 ECH
Pvu6g0980 6 21163270 21165746 Pvu7g1869 7 41818676 41820438 PCT