Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0974 CACAGCTTTTGTTTTCGCACTTCGCTGTCTGAGGTTCTGGATTATCAGTGTTTGGGGAGCGCGACATCATCTCTCGGGGAAGGTAACAAAATGGATCATCAAGGGCATGGCCAGAACCCATCGATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAACTAACTGGGCCGCCCGGGTCGGTTGTGACATCGGTTGGGACCATTCAATCCAGCGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAGTCAGTACCAAGAAATTGAGAAGGTTACCGATTTCAAGAACCATAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATATCAGCCGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTTATACTAGAGTTGACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCTATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCCCTGATGCACTTCCATACTGCTATATGCAGCCTCAGCATGCTCCTCAAGTTGGAACTGCTGGTGTCATAATGGGTAAGCCAGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAACCATCCCCAGAACATTAG 873 0.4777 HSFCFRTSLSEVLDYQCLGSATSSLGEGNKMDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQLTGPPGSVVTSVGTIQSSGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSSQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPPDALPYCYMQPQHAPQVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0974 290 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 31 290 - -
Pvu6g0974 290 SUPERFAMILY Histone-fold 102 203 IPR009072 GO:0046982
Pvu6g0974 290 Gene3D Histone, subunit A 93 209 IPR009072 GO:0046982
Pvu6g0974 290 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 31 290 - -
Pvu6g0974 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 131 194 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0974 Pvu-Chr6 21135880 21138805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0974 31 277 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.484 1.92e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu6g0974 CBFD_NFYB_HMF 7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0974 K08066 - gmx:100527803 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0974 6 21135880 21138805 Pvu7g1865 7 41781066 41782914 ECH
Pvu6g0974 6 21135880 21138805 Pvu6g0974 6 21135880 21138805 ECH
Pvu6g0974 6 21135880 21138805 Pvu7g1865 7 41781066 41782914 PCT