LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0957	ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCACCGGAGACCGAAGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCGTCTATTCCTGTTGACGCCGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGATGTGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAATAGCGCTTCAAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAGGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACAGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCTGGTGGGTCCATATCATCCCTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTAATTGGACTTGAGTACTTGCACAAAAATGGGATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCAAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCCGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACCGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATTGGGACAACTAAGTCGCATCCGCCAATACCTGATCATCTCTCAGTTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAGTTTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGCGAACACATGAATTCTCTTACTCTGTCATCAAATGTCACGGAAAATTTCATAGCTTCATCACCATCATGTGCTCCAAATGATGATTCCTTCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATGATATGTGTGTGATTGATGACAAAGAAGAGTTCTCGCAGAATGATGTTAATTACAAATCATTGATGTCAACTAATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAGTTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGACAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCTTTTTTAGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTTATTGACAGTACAAGTGATGATACCGCTTCTCGAAATTTTTTGAAATTACCCCCCAAAAGCAGGTCACCAAATCGAGTACCAATCAGCACTCCATCTAAAGCCGTCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCAACTGTTGGCCATGTAAATAACCATACTTCACAGGATATTCCAGCATCTCCCCTTAAAGGAATGTTAGTTGACTCTCAGCAGCAGCCTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAACTCGACCAGGAGCTTGAGAGGAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTCTACATCGGCAGAGGGAACGAACAAGATTTGCTTCTCCCAACAAATAA	1962	0.4475	MQDIFGSVRRSLVFRGSPETEETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSIPVDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAANSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLIGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLTLSSNVTENFIASSPSCAPNDDSFLCSSTVNPLDSGNKQLWGMSNDDDDDMCVIDDKEEFSQNDVNYKSLMSTNIESFNPMSDPSDDWGCKFDASSELENREVNFVTDESYMPPDQSGDDKGQTDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIDSTSDDTASRNFLKLPPKSRSPNRVPISTPSKAVDNTGSPGSNGQSSSTVGHVNNHTSQDIPASPLKGMLVDSQQQPSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPNK*	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0957	653	Coils	Coil	604	624	-	-
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	512	579	-	-
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	602	624	-	-
	Pvu6g0957	653	Gene3D	Transferase(Phosphotransferase) domain 1	64	358	-	-
	Pvu6g0957	653	Pfam	Protein kinase domain	66	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	445	475	-	-
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	634	653	-	-
	Pvu6g0957	653	CDD	STKc_MAPKKK	64	328	-	-
	Pvu6g0957	653	SMART	serkin_6	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0957	653	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	609	-	-
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	512	653	-	-
	Pvu6g0957	653	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524
	Pvu6g0957	653	ProSiteProfiles	Protein kinase domain profile.	65	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0957	653	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1	1	609	-	-
	Pvu6g0957	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Pvu6g0957	653	MobiDBLite	consensus disorder prediction	586	601	-	-
	Pvu6g0957	653	Coils	Coil	98	125	-	-
	Pvu6g0957	653	SUPERFAMILY	Protein kinase-like (PK-like)	64	329	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0957	Pvu-Chr6	21020430	21026232	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0957	1	653	MAP Kinase Kinase Kinase	AT1G54960	57.703	0.0	694

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pvu6g0957		Pkinase	2.5e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0957	K20606		-	gmx:100807537	1140.95