Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0955 ATGTCAGATTCACAGTCCAGTACTGAGATCTTCACCGTTCGGATTGTCTCCATCGACTATTACATGGCGCCGCCAATCCCCGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAAAGGTGAACGAGGTGCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATGCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCGGATATACCATTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCGTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCGACAAGACAACATGTACATGGATGCAGCATTGTACAAGCAAGGAAATTTTATGGCTATCATTCACATGAGGAGTTATTTGTAAAGATATACTTATATTATCCTCAAGATGTTTCCCGTGCAGCTAGTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCATTCATTCTTCAGTTTCTGGTTGATTACAACCTGTATGGCATGGGTCAATTGCACTTATCAAAGATGAAGTTCCGCCGCCCCTTACCCGACACTTGCAAGAAATTAAATATTGATGGCCAGCATAGAAAGGCAGATCCACTTGCTCATGCATGTTTAGAGTCAAAATTGTGGGTGTCTTCCATGATTCCATCTGAGTGGATATGGTTAGCCCCAAGCAAATCCAGTGCTTCTTCAAAAGATGAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATTCTTCTGTGGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAACGGACTGGGATTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATTGAATTATGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTCCTGGGAAGGAGTGGAGTGAAACAGACATAATAGGCTCAGCATCACCCCCTGCTACATTATGCAAAAATGCCAAATTTCAAAAGGAAGGGACTGACGCCAATCTTGAAATGTTGACTATGGGTGAAATTCAGTCAACTGAAATGATTGGATCAATGGACATAAAGGCTGCTGATAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTGCTTATGAAACAATCTTGACTCCCTTGTTGCCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACCGAGGATATGCTTGAGTTGGAGTTACCAAAGGAAAAACCTTCTCTTTCCTTTGATAACAATTATCGCATTGGAACTTCATCAAACATGAAATTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAGGTCAATGCGGTGGTCTGGTTGGATCCCCTTCTCTATCAGAGATAAACAGTGAATTCAAAAGTGCCTCTGAGTACCATGTTCTGCATACTACTGGCACAAGTACAGGTAGTAAAGATATAAGGAACAAAAAATGGGGGTCTTTGCCTCTATCCACAATTGATCAGGTTAATAACAACGGAGAACGAGCTACTTTACTTGTGACTCATCCAGTTGAAAGTGATATTGGAGATTATGCTCACTCAGATCGCCTGAACATAAATGAGGTTAGAAATAGTGCTTGTATTACAAGGAACAAGGACAAAAATGGTTCAGATTCAAAAGAAGTACACACATCAGGTAGTTGTTCTTTACGGGACTTGATGAGGCGAAAGCGATTTCACCGAGTTGAACAAGCTGAAGACGAGCCTGGAACTACTAAAAAGCTTCTTTTAGACAAACATGAGGAACCAAATGAATGCTTTTGGCAAAAACAACTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAAGACCAAAATGCTAATTTATTTCATGGGAAACTGCCCCTTTCAACTGGAATTGACAGTCGTTCACAAGCTGGTAGGCCAAAAGATGGATGTTTTGAACAACATGAAATGGAAGGTATAGAAGCAAATGCAGAGTTGAGGAACTGTACAGAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGCCTCCATAATCCTGAAAAGTTATGTTCATTTGATTCCATAAATCAATCTGTGGCATGCAGGGGTGAAAACCTTAAGGTTGGCTTGACTTTTACAGACCATGTAGCTTCTGATGCCTATATCCTAAGTCCCTTTGTAGACACACGGTTGAGAACAGCTGCTGTTCATGTAGTCAGAGCTCCCGAGAGGAGTCCACAAACTGATTCTTCTGCTTCAACTAGTGTGCAAAACTCGTTCATTATTGATAGCGTGTCTGGTAAATATAATTTTGTGAATCAAAGTTCTCCCCAAAGCTTATCATTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGAAGAAAAGTGATGCAAAGGATGTGCAAGTATTGTTTAGTGAAAAGGTGGATAATCAAAAGGTGGGTGAAAATTTGCTGCATGAGATTATTGGCTCTGAACCCACAAGCAAGAACCCTCCGGCTGATGAGAATCTTGAAAGTAGAACAACCTCTAATACCCATTTACATTTGGTTGAAGACAGCTCAGATGAAATGCCAGTTGAAGGGGATGATGATCTGGATGTATTTCTTCCGATTTCTGCAAGGATTTCTAAGAAAGGGATGGAAACTTGCAATGAGTATGTTACAAATAAAACCTTTACATCTAATGGGACAAAGGTTGCCACCACTCACTATCAAAATGATGGCTCTCACCTGTACCTATTAACACCTAAAATGTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTCCTTATCATGTACATCAAGAACCTGATGCAGAGAACAAGGATAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGCATGAAGATGCTGATACAGAAAAGAGGGCTCCGTGCAATGGAGAAGGACAAACAGAAAGAGTGAAAACACACCTAGATGACTCACAAGATACTCCTCAGACATCAGCCCCGGATGGAAAATCAATCTTTACCCCTCTAAGTCAAACTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCCCTTGGTTTTCAGAACGATAGTGCTTCTATTATTGATGTTCTAGTTCTTCTACACAGTAAATTTGTACCTTGTCGGAGAAATGTCGATGGTCTATCTGGCTCGAAAGTATTGGTTTTCACTGATGAGAAGCTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCACATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCTTCTGAGTCTTTGAATTCTTCTGAAGATATGAAAACTTCTGAAAAAGAAATCTTGGAGCTGGACATTAATGACACGCCTAGTTTAGATTGTTGTGTGCCAGAAAATTCAGTAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTCCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAATTGAACTTATATTCTGTTGAATCTGTTGCTGAATCTGTTTTGAGGCGGAAAGTTCCTTCATTTCACCATAAAGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCCAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTAGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCCAATACACTTGGGGTTAGTCCATTCTCACCAGAGCAACATGTCCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTCGCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACTACTAGAGTTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTACAGAGAAAGTTCTTCAACGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTCCAGTGTGGTCGTAGTACACTGGAAAATGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATCTATGGGGATACTGATAGTATGTTTGTTCTCCTTAAAGGACGCACTATGAAAGAGTCCTTCCAAATTGGAAGTGAGATTGCCTCTGCCATCTCTGCTATGAATCCTAACCCTGTCTCCCTAAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAACTGAACCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGGCTCTTTTTTGAGCAACAAGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGAGAAATTCTGCCTTAAAGATTTTATTTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGACGGTTGACCCTAGGGCAGAACCACGTTATGGTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGATTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTAATTCCCCGTTTAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGACTTGTTGATGCTGACCTCAACCATTGGCTTTTAGAGATGCCTCGTCCCACAAGGGAAGCTTCGGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAGCCCGTTTATGCAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTAATAAGTAAGACTTCGAAGTTAGAGAAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGTGATAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCCATTTCATGCTTGGTGTTCTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATATTGCTGCAGATACAGACTTGTACCCGAGATGCATAGTGGAGTGGTTCTGA 5892 0.4111 MSDSQSSTEIFTVRIVSIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHMHRALPYLYVPCSDIPFQLDQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSIVQARKFYGYHSHEELFVKIYLYYPQDVSRAASLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRRPLPDTCKKLNIDGQHRKADPLAHACLESKLWVSSMIPSEWIWLAPSKSSASSKDEAHCPKRQSICELEGDSSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMPSDPGKPLPEDVMKLFSVGLDFEKKFIELCSEAETSLFCTPPGKEWSETDIIGSASPPATLCKNAKFQKEGTDANLEMLTMGEIQSTEMIGSMDIKAADKEAKNLLKWLATSQAAEDINSDDELAYETILTPLLPAATIDKVLEEANMAYESESQKECQDILDSTEDMLELELPKEKPSLSFDNNYRIGTSSNMKLPQVDGSNDDEFSGQCGGLVGSPSLSEINSEFKSASEYHVLHTTGTSTGSKDIRNKKWGSLPLSTIDQVNNNGERATLLVTHPVESDIGDYAHSDRLNINEVRNSACITRNKDKNGSDSKEVHTSGSCSLRDLMRRKRFHRVEQAEDEPGTTKKLLLDKHEEPNECFWQKQLDLKTMQTDEEEMEDQNANLFHGKLPLSTGIDSRSQAGRPKDGCFEQHEMEGIEANAELRNCTEGGSALMHDGPGLHNPEKLCSFDSINQSVACRGENLKVGLTFTDHVASDAYILSPFVDTRLRTAAVHVVRAPERSPQTDSSASTSVQNSFIIDSVSGKYNFVNQSSPQSLSFVQHDQMTFCENSVKKSDAKDVQVLFSEKVDNQKVGENLLHEIIGSEPTSKNPPADENLESRTTSNTHLHLVEDSSDEMPVEGDDDLDVFLPISARISKKGMETCNEYVTNKTFTSNGTKVATTHYQNDGSHLYLLTPKMLPPSVDTVHRWLLCNERGHIPYHVHQEPDAENKDKCASETEPPLRPKLHEDADTEKRAPCNGEGQTERVKTHLDDSQDTPQTSAPDGKSIFTPLSQTGFRDPASVGCGQQLTLLSIEILAESRGDLLPDPQFDGINIIALGFQNDSASIIDVLVLLHSKFVPCRRNVDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLNSSEDMKTSEKEILELDINDTPSLDCCVPENSVIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKVPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPRKVRRGILPRLLEEILTTRVMVKQAIKKLAPTEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLENAISFVNLHEKWNARVIYGDTDSMFVLLKGRTMKESFQIGSEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQTEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEQQDLLEVKTYLQRQWKRILSEKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMTVDPRAEPRYGERIPYVVIHGEPGARLVDMVVDPLEVLAINSPFRINDLYYINKQIIPALQRVFGLVDADLNHWLLEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLVQASARLCSQCSENEVAAATAVISKTSKLEKEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFFERRKVQKELLAATHIAADTDLYPRCIVEWF* 1964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0955 1963 CDD POLBc_zeta 1377 1825 - -
Pvu6g0955 1963 Gene3D - 1671 1836 IPR042087 -
Pvu6g0955 1963 CDD DNA_polB_zeta_exo 1101 1351 - -
Pvu6g0955 1963 PRINTS DNA-directed DNA-polymerase family B signature 1429 1442 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu6g0955 1963 PRINTS DNA-directed DNA-polymerase family B signature 1538 1550 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu6g0955 1963 PRINTS DNA-directed DNA-polymerase family B signature 1594 1602 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu6g0955 1963 Pfam C4-type zinc-finger of DNA polymerase delta 1862 1935 IPR025687 -
Pvu6g0955 1963 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1955 IPR030559 GO:0006281|GO:0016035|GO:0019985
Pvu6g0955 1963 MobiDBLite consensus disorder prediction 1018 1081 - -
Pvu6g0955 1963 SUPERFAMILY DNA/RNA polymerases 1416 1828 IPR043502 -
Pvu6g0955 1963 MobiDBLite consensus disorder prediction 897 917 - -
Pvu6g0955 1963 Pfam DNA polymerase family B, exonuclease domain 55 196 IPR006133 -
Pvu6g0955 1963 Pfam DNA polymerase family B, exonuclease domain 1099 1255 IPR006133 -
Pvu6g0955 1963 ProSitePatterns DNA polymerase family B signature. 1596 1604 IPR017964 GO:0000166|GO:0003676
Pvu6g0955 1963 MobiDBLite consensus disorder prediction 1018 1068 - -
Pvu6g0955 1963 Gene3D DNA Polymerase, chain B, domain 1 30 196 - -
Pvu6g0955 1963 SUPERFAMILY Ribonuclease H-like 36 1376 IPR012337 -
Pvu6g0955 1963 SMART polmehr3 1102 1608 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu6g0955 1963 Gene3D Helix hairpin bin 1495 1555 - -
Pvu6g0955 1963 Pfam DNA polymerase family B 1370 1817 IPR006134 GO:0000166|GO:0003677
Pvu6g0955 1963 Gene3D - 1137 1412 IPR036397 GO:0003676
Pvu6g0955 1963 Gene3D Palm domain of DNA polymerase 1415 1660 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0955 Pvu-Chr6 20977076 21000096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0955 39 195 Core DNA Replication Machinery Family AT5G63960 27.778 6.56e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0955 K02350 - gmx:100777934 3257.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0955 6 20977076 21000096 Pvu6g0955 6 20977076 21000096 ECH