Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0950 TCTCCACATCATAAGAAGGAGAGTTTCGTGGGTTTTGTCTATATACCTCACTTCCACCAAACCCATCTTCTTTCTTTCATTTTCCTCTCATTTTCCCTTTGCAAGAACCAGAGAGTGAAAACAAACACTGGTTTGGGAAGAAAGAGAAGAGAATCAATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCCACAGAGAACACTGGAGAAGATGCAGGAGCAGTTAAACAGAAATTAGAGATGCTTGGCCAACTCCACAGTCCAAATTCAAACACTTCAACCACAACAAATAACAGCAATGGCTCAAACACAACTTCACAACCACCTCACAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAATGCCGAAGTGGTAGCTCTGTCGCCGAACACACTGGTAGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCATAACCTACCGTGGAAGCTGAAACTGAGAACCACGACGGAAGTGAAAAAGCGCGTTTACGTTTGTCCCGAAGCCTCCTGCGTCCACCACAACCCAGCTCGAGCACTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCCAAAATATGTGGAACCAAGGAATACAAATGTGACTGCGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGAGAACAACAAATTCAACGAAGCAAGTATCATGCATGGTTCAAACCTGCAACCACCAATAATCCCAAACCTAGTAGCATCACTACCAATCAATACCAATAATCACAAGCAACCATTATCACTCCCTCACGACCTCATTGCAACAATTCCACCAAAACCCTTTAACAACAACATCTCAGCATTCACAAGAACCCTTTCATCCACCTCTTCTCCCTCTCAACTCTGCTCAAACTCACCAAACATCAACATGTTTGAGGAAAATGCTCAGACTCACATGTCCGCCACAGCACTGCTTCAAAAAGCTGCGCAAATGGGTGCCACAGTGAATAGTAGCAACAACAGCATGATGACAGAAAAGGGCTTTGCTACAAGCATGGCACCACCATCATATGGGGTCATGAACCACCACCACATTCACAGTCAACAAGACCTCTCTCACTATAATAACTTCCATGCAAATGGGACGATGATGGATGGTGGTGGCAATAGCATGGGATCAGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTACAGTGATGTTTTGCATGCAATGAACAATGGTAGGTCAACAACTTCCATTGATGTTGGTGGAGCTAAAGGGGGTGAGAATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGATGGAAGTTTCTTTGGTGGTGAACAGTCAGAACTAAAGATGGAATATGGAGAAATTAGTCAAATAAGAATTCAAGGCTTGAACCAGTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1644 0.4386 SPHHKKESFVGFVYIPHFHQTHLLSFIFLSFSLCKNQRVKTNTGLGRKRRESMSNSNITSCDSWSFSTENTGEDAGAVKQKLEMLGQLHSPNSNTSTTTNNSNGSNTTSQPPHKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENNKFNEASIMHGSNLQPPIIPNLVASLPINTNNHKQPLSLPHDLIATIPPKPFNNNISAFTRTLSSTSSPSQLCSNSPNINMFEENAQTHMSATALLQKAAQMGATVNSSNNSMMTEKGFATSMAPPSYGVMNHHHIHSQQDLSHYNNFHANGTMMDGGGNSMGSGMSGLDMFNAILDQSKALSKIIEQNNRSSYSDVLHAMNNGRSTTSIDVGGAKGGENVMTLDLLGIGGGGGDGSFFGGEQSELKMEYGEISQIRIQGLNQFQQQTAAYEN* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0950 547 Gene3D Classic Zinc Finger 197 276 - -
Pvu6g0950 547 MobiDBLite consensus disorder prediction 88 115 - -
Pvu6g0950 547 Pfam Zinc finger, C2H2 type 143 165 IPR013087 -
Pvu6g0950 547 SMART c2h2final6 184 214 IPR013087 -
Pvu6g0950 547 SMART c2h2final6 143 165 IPR013087 -
Pvu6g0950 547 SMART c2h2final6 219 239 IPR013087 -
Pvu6g0950 547 Gene3D Classic Zinc Finger 139 166 - -
Pvu6g0950 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Pvu6g0950 547 SUPERFAMILY beta-beta-alpha zinc fingers 142 239 IPR036236 -
Pvu6g0950 547 MobiDBLite consensus disorder prediction 88 127 - -
Pvu6g0950 547 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Pvu6g0950 547 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 62 508 - -
Pvu6g0950 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 62 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0950 Pvu-Chr6 20922488 20926014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0950 94 276 IDZ Gene Family AT5G66730 77.660 4.31e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu6g0950 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0950 - - pvu:PHAVU_006G090800g 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0950 6 20922488 20926014 Pvu7g2019 7 43594990 43598796 ECH
Pvu6g0950 6 20922488 20926014 Pvu6g0950 6 20922488 20926014 ECH
Pvu6g0950 6 20922488 20926014 Pvu7g2019 7 43594990 43598796 PCT