Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0911 ATGACAATGGAAGAAGAGTCCTTGGCAACAGTCCCATTTGACAGGGCTATTGAACAGGCAATTGTTTCTATCAAGAAAGGTGCATATTTACTCAAGTGTGGTCGTAGAGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCGTTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGATAAGGCACAAGCTGCTACTTGGTTTGTTGGCTTGAAAGCTGTTATCTCTAGATGTCAGCATCCAAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGTGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAATCTTACGAAGAAAAAAGAATCTCGGCCTTCTGGATGAAACCTCTCAGTTTACTCAGGTACATAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGCACTTCTGATAACTTATATTCATCCACATCTTTCATCTCCAGCACTCATGGTGTAACAGATAATTCAGTGCCATGTTCTCCATACATTGATCCAGAGGTTCGTAGTAACATTGAGTCAACTCGCATTGATAAAGAGCACAAGAAGAATTTGTCCTATAGGTATTTGACGCATTCTACTTCCGTACATTTAGGAAAAAGTAATGTATTAAAGGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGCGGGGTCTATTCTTTGGTGCCGAAGTTACTAGAATCCACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAGTGGGGAAGACTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTTGATTCTCTTAATGGTCTTCATGTAAAGCATGTTTCTTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCTGTGCAGACTTATTTAATGAAGGGAGAACAAGAAGTCAGTGGATACCGCAAAAACTTGGTGGATACTTAGATGGTATTAGTATCTCAAGTATTGCTTGTGGGGAATGGCATACTGCGATTATCTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATGTTCGGAGCTGTTCAAGTCCAAAAGAAGTTGAGTCTCTTAGTGGACTAAGGGTGAGATCTGTTGCATGTGGATCGTGGCATACATCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCCGATAATGGAAGCAAGCTTGTGCCAACATGTGTTACACAACTTGTAGACTATGATTTTGTTCAAGTGTCCTGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATAGGTAGTGCCAAATATGGACAGTTAGGAAATCCACATGCCAAGGATAAAGCAGTCATGGTTGAGGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACTGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTATACATGGGGCAGGGGTGAAAGTGGTCAACTGGGGCTAGGTGATACTGAAGATAGATATACACCTTGTTTTGTTGAGGCTCTGAGAGATAGACAGGTAAATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCTAAATCCCGAAATTACAACAGTCAACAGTTGTTGAAGCAACAACAAAAAATTGCTGATATGACTGAGGACAGGGGAGAGACAACCGTGACACAAGGGCCTCTGTTATCACTTGGTCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAGCAGGATGTAGAAGATATTTCGTCTAGGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGTCCTGCCATATTTAAAATTAATTGTACAGAAAATCCAGTTGTTCATGTTTCTTCATCCAAAAGTAAATTAGCCACAGTTTCTCCTTTTAATATGGAATCTACAACATATAACTTCTCTAAAGTAGAGTCAGATACAACTAAGTCTGACAAGCTGCTCCTTGAAGAAGTTCATAGGCTGAGAGCCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATAATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTCTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACGCTGGACAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCGAATGTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATGGCAATGTGGACAGTCTATCCAATTCTCCTATAGTATTCTCTGAGACATTAAAATCCAAATTTGGGAGAAGTATGTTTCCCAAAAACGAAAATTCTAACTCTAACAGAGGAGAATCTCAACAACAAGATAATATCAACAATGGCTTGAAGGCTGACTGGGTAGAACAGTATGAGCCAGGTGTTTACATCACATTTACAACCTTGCCATGTGGGAAAAAAGGCCTCAAGCGAGTGAGATTTAGTCGCAAACGATTTTTAGAGAAGGAAGCCGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCAGAAGTATGGGATTGAAGGATATATAAACACGAGCCAAAGTCAGGTGAAAGGCTAA 3219 0.4098 MTMEEESLATVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAATWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDETSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFISSTHGVTDNSVPCSPYIDPEVRSNIESTRIDKEHKKNLSYRYLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVSCGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGYLDGISISSIACGEWHTAIISSCGRLFTYGDGTFGVLGHGDVRSCSSPKEVESLSGLRVRSVACGSWHTSAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAIGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKQQQKIADMTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNHPESQQDVEDISSRLGGMPQWGQVPCPAIFKINCTENPVVHVSSSKSKLATVSPFNMESTTYNFSKVESDTTKSDKLLLEEVHRLRAEAKRLEEQCELKNNKIQECQQKIEESWSVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNVATIVTDMKSPRDGNVDSLSNSPIVFSETLKSKFGRSMFPKNENSNSNRGESQQQDNINNGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFLEKEAEKWWEENQSTVYQKYGIEGYINTSQSQVKG* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0911 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Pvu6g0911 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 374 426 IPR000408 -
Pvu6g0911 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Pvu6g0911 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Pvu6g0911 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Pvu6g0911 1072 PANTHER F12P19.9 PROTEIN 16 1060 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Pvu6g0911 1072 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 724 IPR013083 -
Pvu6g0911 1072 ProSiteProfiles BRX domain profile. 1003 1058 IPR013591 -
Pvu6g0911 1072 MobiDBLite consensus disorder prediction 977 995 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Pvu6g0911 1072 SMART fyve_4 646 715 IPR000306 GO:0046872
Pvu6g0911 1072 Gene3D - 16 133 IPR011993 -
Pvu6g0911 1072 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Pvu6g0911 1072 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Pvu6g0911 1072 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Pvu6g0911 1072 Gene3D - 482 652 IPR009091 -
Pvu6g0911 1072 Gene3D - 388 481 IPR009091 -
Pvu6g0911 1072 Gene3D - 229 387 IPR009091 -
Pvu6g0911 1072 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1060 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Pvu6g0911 1072 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Pvu6g0911 1072 Coils Coil 853 887 - -
Pvu6g0911 1072 CDD PH_PLC_plant-like 15 127 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Pvu6g0911 1072 Pfam Transcription factor regulating root and shoot growth via Pin3 1003 1057 IPR013591 -
Pvu6g0911 1072 SUPERFAMILY FYVE/PHD zinc finger 653 726 IPR011011 -
Pvu6g0911 1072 SUPERFAMILY PH domain-like 16 126 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Pvu6g0911 1072 MobiDBLite consensus disorder prediction 975 995 - -
Pvu6g0911 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Pvu6g0911 1072 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0911 Pvu-Chr6 20561637 20568708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0911 1004 1062 Major Intrinsic Protein MIP AT1G31880 44.068 6.54e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0911 - - gmx:100797223 1972.59