Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0910 ATGTCAAAACTAGCCCTTCTCTTTTTTCTTCTATTCACATTCTTCAATTCTTCAACAGTCACAAGTTTATATTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAAACTATCCCTGATCCCGACTCCTCTCCACGCGCCGAGTGGCTCTTCGCCCACGCCACGCACTACGCCGCCGCCGAAGCGCTTGGCGGCGCTTGCGGCTACGCCGACATTCCCAACGGCATGGCCACCGCCGCACTCAGCGAAGCCCTCTTCGACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCTCGAGGAGGACTCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGTCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTTCCCATTGAAGTTTTCGAGAAAATCGCAATCTGGAAAAGTGGCAGCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGGGGAATCCGGTTTACAATAAGTGGTTCTGGAATCTTCATTTCGGTTCTGATTAGTAATGTGGGTGGAATGGGGAACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCCATGGGTAGAAACTGGGGTCAGAATTGGCATGTTAATGCTTTACTACAGAATCAACCTCTTTCTTTTGAGCTCACTGCTAGTGATGGAAGAACTGTTAAGTCTTACAGTGTTGCTCCCAAAGATTGGACCTTCGGACAATCTTTTCAGGGAAAACAATTTCATGACACATCAATTTAA 837 0.5209 MSKLALLFFLLFTFFNSSTVTSLYSPSPPAAPFSQTIPDPDSSPRAEWLFAHATHYAAAEALGGACGYADIPNGMATAALSEALFDRGQICGACFELRCLEEDSDFDRRWCISGASVVVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPIEVFEKIAIWKSGSGNMPVQYRRIECRREGGIRFTISGSGIFISVLISNVGGMGNIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFELTASDGRTVKSYSVAPKDWTFGQSFQGKQFHDTSI* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0910 278 PANTHER EXPANSIN-A13 33 274 - -
Pvu6g0910 278 SMART dpbb_1 77 171 IPR007112 -
Pvu6g0910 278 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Pvu6g0910 278 PRINTS Expansin signature 137 154 IPR002963 GO:0009664
Pvu6g0910 278 PRINTS Expansin signature 180 192 IPR002963 GO:0009664
Pvu6g0910 278 PRINTS Expansin signature 192 213 IPR002963 GO:0009664
Pvu6g0910 278 PRINTS Expansin signature 227 248 IPR002963 GO:0009664
Pvu6g0910 278 PRINTS Expansin signature 256 272 IPR002963 GO:0009664
Pvu6g0910 278 Pfam Expansin C-terminal domain 182 259 IPR007117 -
Pvu6g0910 278 SUPERFAMILY PHL pollen allergen 178 269 IPR036749 -
Pvu6g0910 278 Pfam Lytic transglycolase 77 171 IPR009009 -
Pvu6g0910 278 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Pvu6g0910 278 PRINTS Expansin/Lol pI family signature 164 180 IPR007118 GO:0005576
Pvu6g0910 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Pvu6g0910 278 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Pvu6g0910 278 Gene3D - 34 177 IPR036908 -
Pvu6g0910 278 PANTHER EXPANSIN-A15 33 274 IPR002963 GO:0009664
Pvu6g0910 278 Coils Coil 277 278 - -
Pvu6g0910 278 Gene3D - 181 273 IPR036749 -
Pvu6g0910 278 SUPERFAMILY Barwin-like endoglucanases 47 199 IPR036908 -
Pvu6g0910 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 270 IPR007117 -
Pvu6g0910 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 181 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0910 Pvu-Chr6 20544891 20546039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0910 47 274 Expansin Gene Family AT3G03220 66.239 3.26e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0910 - - gmx:100790211 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0910 6 20544891 20546039 Pvu6g0910 6 20544891 20546039 ECH
Pvu6g0910 6 20544891 20546039 Pvu8g2492 8 55529938 55532235 PCT