Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0909 ATGGCGATTCGAGATCAAAGTGAATTCTACAGATCACCGGGTGGTCCTTCAGTAGGAAGTGGTGTATCTTTGAGTTCTGGAGTGCATTCCGTTACTCATATTCAACTTAATGAACAGTTTTCTTGTGGGAGTGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAGTGTTACAAATACAGCGGATTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAGCTAGTTGAGACTCCTAATAAAGAAACTTCAATCCCAGAACAACTTATGAAGTCTAGTTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACAGCCTTAGCTCCTCAGATTCAGATACACCAAATGAAAGTTTGTCCCCCATGTCATCCATCAGTGACATCCATACAAGTGATTTTACTTGTGCCGAGCCCAACACAACATCCGAAGAAGCTGGAATAAACGCCGATTCTTCTCATGATGAGAAACCTCTTATGAAATTCAAGCTTCCTACAGACGAAAGTCTTTGCATGAAAGAAGACACAACAGAAGAATCTTCCAGCCAGACTTTCAAACTCTTTGGGATTACACTTTTTGTAACAGATCCATGCAAACCCTCTTCTCCAACAATTGAAGCATGCAAACCAATACCTCTAAACAAACGCAAGGGGGGTGGAAGATTGGAACTTCTTGGCCACATCACACCAAGTGAAACATCAGCCATATCCCTGCTAAAGGTGAGAGTGGGTCCTGAAGCATGTGGGAAAGGGTTTGTGCCATATGAAAGGTGCATGGCAGGGAGAGAAAACAAGTCTTCATCTGTGACAAATGATAATAGAGAAGAACAATGCATCCACCTTTCCTTGTAG 1086 0.4254 MAIRDQSEFYRSPGGPSVGSGVSLSSGVHSVTHIQLNEQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGSVTNTADSIEIPPPRPKRKPMHPYPRKLVETPNKETSIPEQLMKSSSLKSSDFDQENQSPKSVLSGAGSDSLSSSDSDTPNESLSPMSSISDIHTSDFTCAEPNTTSEEAGINADSSHDEKPLMKFKLPTDESLCMKEDTTEESSSQTFKLFGITLFVTDPCKPSSPTIEACKPIPLNKRKGGGRLELLGHITPSETSAISLLKVRVGPEACGKGFVPYERCMAGRENKSSSVTNDNREEQCIHLSL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0909 361 PANTHER PROTEIN REVEILLE 7-RELATED 26 288 - -
Pvu6g0909 361 MobiDBLite consensus disorder prediction 126 143 - -
Pvu6g0909 361 MobiDBLite consensus disorder prediction 115 236 - -
Pvu6g0909 361 Gene3D - 62 108 - -
Pvu6g0909 361 PANTHER SWI/SNF COMPLEX-RELATED 26 288 - -
Pvu6g0909 361 MobiDBLite consensus disorder prediction 148 226 - -
Pvu6g0909 361 SMART sant 59 107 IPR001005 -
Pvu6g0909 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Pvu6g0909 361 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Pvu6g0909 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Pvu6g0909 361 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Pvu6g0909 361 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Pvu6g0909 361 CDD SANT 62 105 IPR001005 -
Pvu6g0909 361 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0909 Pvu-Chr6 20539952 20543312 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu6g0909 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0909 - - gmx:780539 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0909 6 20539952 20543312 Pvu6g0909 6 20539952 20543312 ECH