LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0885	ATGGTGGAACATAGTTTAGTTGCTAAGATGATTATTACAATAATTTTAAAACCAGATACTCTTAAAGCAAGTTTACTCAAATCACAGTTCCTAATCAAACCAATACATTTTCTCTCAAACACGATACAAGCTCAAAGCGTGATGCTGCAACTTAAGGTGGTGGCCTTAATTTTGATATGGTGGAGCAGTAATGGTGTTGAAGATGCAGTTGCAGCCAAAGATGCACATTTAGTAAACATGGGGTGCAGCTCGTTCAATGCTTCCGATTTGAGAAGCTTCTTTGCGAATATCAATGAAACGTTTTCAGACATGAGAGAAGAGATTATAAATCAAAGCAAGCACTTTGGCACAGTACAGAAGGCCAGAGGAGAGGTCCTCACATACACTATGTTTCAGTGCAGAAACTATCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACAATGCCACCACCCAGATCCGCAACTGCTCCGGTGGCAACGGTGCCAGAGTCATCTACGATAGCTGCTTCCTCAGGTATGAGAGCAACAGGTTCTACGATCAGACCAATGAAATTGGAAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTTCCTGATTTTAAAGTTGCTGGAGAACAAGCCCTAATGGACCTCCAAACAGCAACACCGAAAACTACAGATTTTTATGCAGCTACTAAGACACTGGTGGCTGGTGGTAGTGCTGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTGCGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCTAACACAGAGGGAAGAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAAACCATTGATATTGCACCCTATTTGAAAAAAGGAAATTCAAACAAGAAATGGGCTATAATAGGTGGTGTTGTAGGAGGGGTTGTTCTTCTCCTTCTGTTGTTTGCCTGGAGAATGTCAAGAAAAAGAAACAAGGTTCCCAGAGGTGACATATTGGGAGCAACAGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCTGCAACCAAAAATTTCAGTGCAGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAACTAGTTTTTGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGGGAAGTGAAGCTTATAAGTAATGTTCACCACCGAAATCTCGTTAGGCTTCTTGGTTGCTGCAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCTAATAAAAGTCTTGACAAATTCTTATTCGGTAACAAAAAAGGTTCCCTCAATTGGAAACAACGCTCTGATATAATTTTAGGCACAGCAAGAGGACTGGCATATCTGCATGAGGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAATATCCTGTTAAATGATGATCTTCAGCCAAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTCAGCACAAAATTTGCAGGAACTTTGGGATACACAGCACCTGAGTATGCCATGCATGGTCAATTATCAGAGAAGGCAGATACCTACAGCTATGGTATTGTAGTCCTAGAAATCGTAAGTGGTCATAGGAGTACCGATGTAAAGGATGATGAAGATGGCGAATACCTGCTTCGACGAGCATGGAAACTGCATGAGAGAGGCTTGTACTTGGAGCTGGTAGACAATGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGAAGAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCATCAGCTTCAACGAGGCCAACAATGTCTGAAGTAGTAATGCTACTGAAAAGCAAGAGCTTAATGCAGCACCTGCAACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAAGCAACTCTACTAGTTCATCTAATGCTACTGTCTCCATTTCTATTCCATCAGCTCGATAG	2046	0.4076	MVEHSLVAKMIITIILKPDTLKASLLKSQFLIKPIHFLSNTIQAQSVMLQLKVVALILIWWSSNGVEDAVAAKDAHLVNMGCSSFNASDLRSFFANINETFSDMREEIINQSKHFGTVQKARGEVLTYTMFQCRNYLSKNDCLSCFNNATTQIRNCSGGNGARVIYDSCFLRYESNRFYDQTNEIGSGVSCGNISSTVPDFKVAGEQALMDLQTATPKTTDFYAATKTLVAGGSAVYAVAQCVETATAINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTIDIAPYLKKGNSNKKWAIIGGVVGGVVLLLLLFAWRMSRKRNKVPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVFGKSSNMEDNFEGEVKLISNVHHRNLVRLLGCCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRSDIILGTARGLAYLHEEFHVSIIHRDIKTANILLNDDLQPKIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGHRSTDVKDDEDGEYLLRRAWKLHERGLYLELVDNAIDPNEYDVEEVKKIIEIALLCTQASASTRPTMSEVVMLLKSKSLMQHLQPTMPVFVETNMIPRESNSTSSSNATVSISIPSAR*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0885	681	Pfam	Protein kinase domain	367	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0885	681	Gene3D	-	188	287	IPR038408	-
	Pvu6g0885	681	Gene3D	-	74	178	IPR038408	-
	Pvu6g0885	681	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	60	675	-	-
	Pvu6g0885	681	ProSiteProfiles	Gnk2-homologous domain profile.	182	287	IPR002902	-
	Pvu6g0885	681	SUPERFAMILY	Protein kinase-like (PK-like)	351	670	IPR011009	-
	Pvu6g0885	681	CDD	STKc_IRAK	372	638	-	-
	Pvu6g0885	681	ProSitePatterns	Protein kinases ATP-binding region signature.	372	395	IPR017441	GO:0005524
	Pvu6g0885	681	ProSiteProfiles	Gnk2-homologous domain profile.	75	178	IPR002902	-
	Pvu6g0885	681	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	60	675	-	-
	Pvu6g0885	681	Pfam	Salt stress response/antifungal	200	284	IPR002902	-
	Pvu6g0885	681	Pfam	Salt stress response/antifungal	86	175	IPR002902	-
	Pvu6g0885	681	ProSiteProfiles	Protein kinase domain profile.	366	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0885	681	MobiDBLite	consensus disorder prediction	661	681	-	-
	Pvu6g0885	681	Gene3D	Transferase(Phosphotransferase) domain 1	443	650	-	-
	Pvu6g0885	681	SMART	serkin_6	366	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0885	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	487	499	IPR008271	GO:0004672\|GO:0006468
	Pvu6g0885	681	Gene3D	Phosphorylase Kinase; domain 1	331	442	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0885	Pvu-Chr6	20309805	20314327	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0885	48	679	Receptor kinase-like Gene Family	AT1G70520	35.714	8.64e-125	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu6g0885		Pkinase	9.4e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0885	-		-	gmx:100801131	980.319