LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu6g0884	ATGGTGCAACTAAAGATCCAAGAGCTAACCTTGTTGGTGCTGTGTTCATGGTGGAGCTTAGAGGGTACAGTAGGAGACCCTCAAATATTTTTTCTCAAATGGGATTGCAGCGGATTCACTGCACCCAACTTGTCAAATTTCATCCAAAACCTAAACGCAAGCTTGGATGATTTGACAGCACAAGTTAGCAACCAAAGCAAGCACTTTGCAACGGCTAAAGCAACCTCCGGAACAGATCCTGTCTATGCCATGTTTCAATGCAGGAACTACCTCTCTATCACGGACTGCGCCACCTGCCTTGCCACCGCAGCCGCCAAAATCCGCAACTGCTCCACCGGAGTCAACGGTGCCCGTGTTATTTATGATGGCTGCTTCCTCAGGTACGAGAGCAATGACTTCTTTGACCAGATCATGCCTCGCAGCAGCATACTTTGTGGAAATCAGACTGCAAATGAAAGCCCAGCTTTTAGTGCAGCTGGACAGCAAGTGATAAAGGATTTACAAAGAGCAACACCAAAAATCACTGCCTTCTATGCAGCCACCAAGACACAAGCCGTTGATGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCTCCCAAGATAATTGTTTGGATTGCTTGTCAGTTGAAAGTAGCAGCATACAAGGTTGTCTTCCCAATACAAATGCTAGAGCTTTCGATGCTGGTTGCTTCATGAGATACTCGGAGACACCCTTCTTTGCTGATAACCAAACCGTTGATATCAGTCCCTTTATAAAACAAGGAAGAAGTTCAAGCAAGAAGTGGGTCATTATTGGTTGTGTTGTTGGGGGTGCAGGCCTTGTTGCGATCCTTCTTTTATTATTTCCATGGCGTAGAAGACCCCAAAGTCCCAAGAGAGTTGCTGGAGGTAACATATTGGAAGCGACTGAGTTGAAAGGCCCGAAGAAATACAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAAAATAAACTAGGAGAAGGAGGCTTTGGCGCTGTATATAAGGGGACTATGAAAAATGGAAAAGTTATTGCAGTCAAAAAGTTAATTTCAGGAAAATCCAGCAAGATAAATGACGATTTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCACCACAGAAATCTGGTTCGGCTTCTCGGTTGTTGCAGTAAAAACCAAGACAGAATACTTGTCTATGAATTCATGGCAAATAACAGCCTTGACAAATTCTTATTTGGTAAAAGAAAAGGTTCTCTCAGCTGGAAACAACGCTATGATATAATTTTGGGTATAGCAAGGGGATTGACCTATCTACATGAAGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTAGATGAAGAACTTCAGCCCAAAATTTCTGATTTTGGTTTGGTGAAGCTCCTACCTGGGGACCAATCTCATCTTAGCACAAGATTTGCAGGAACAATGGGATACACAGCCCCTGAATATGCACTTCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTACGGCATTGTGGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTTAAGATTGTTGATGATGACGCTGAAGATGAATATCTTCTTCGAAAAGCATGGAAATTGAATGAGAGAGGCATGCACTTGGAGTTGGTGGACAAAAGCTTAGACCCTAATAGCTATGATGCAGAAGAAGTGAAGAAAGTCTTAGACATTGCTTTGTTATGCACTCAACCATCGGCTGCAATGAGACCAGCCATGTCTGAAGTAGTAGCTCTACTAAGCAGCAATGACTTACTTGAGCATATGAGACCTACAATGCCTCTCTTTATTGAATCAAAGTTAAGACCCCACAGAGATATCTTTGCCTCAATTGGTTCCTCTGCATCTAATGGTACTGCCTCCGATTCTATAGTACCTGCTTAA	1941	0.4209	MVQLKIQELTLLVLCSWWSLEGTVGDPQIFFLKWDCSGFTAPNLSNFIQNLNASLDDLTAQVSNQSKHFATAKATSGTDPVYAMFQCRNYLSITDCATCLATAAAKIRNCSTGVNGARVIYDGCFLRYESNDFFDQIMPRSSILCGNQTANESPAFSAAGQQVIKDLQRATPKITAFYAATKTQAVDGAIYAIAQCAETLSQDNCLDCLSVESSSIQGCLPNTNARAFDAGCFMRYSETPFFADNQTVDISPFIKQGRSSSKKWVIIGCVVGGAGLVAILLLLFPWRRRPQSPKRVAGGNILEATELKGPKKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVIAVKKLISGKSSKINDDFESEVTLISNVHHRNLVRLLGCCSKNQDRILVYEFMANNSLDKFLFGKRKGSLSWKQRYDIILGIARGLTYLHEEFHVSIIHRDIKSGNILLDEELQPKISDFGLVKLLPGDQSHLSTRFAGTMGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKSTDVKIVDDDAEDEYLLRKAWKLNERGMHLELVDKSLDPNSYDAEEVKKVLDIALLCTQPSAAMRPAMSEVVALLSSNDLLEHMRPTMPLFIESKLRPHRDIFASIGSSASNGTASDSIVPA*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu6g0884	646	Gene3D	Phosphorylase Kinase; domain 1	300	401	-	-
	Pvu6g0884	646	ProSiteProfiles	Protein kinase domain profile.	325	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0884	646	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	18	641	-	-
	Pvu6g0884	646	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	18	641	-	-
	Pvu6g0884	646	CDD	STKc_IRAK	331	599	-	-
	Pvu6g0884	646	Gene3D	-	140	241	IPR038408	-
	Pvu6g0884	646	Gene3D	-	29	133	IPR038408	-
	Pvu6g0884	646	ProSitePatterns	Protein kinases ATP-binding region signature.	331	354	IPR017441	GO:0005524
	Pvu6g0884	646	SUPERFAMILY	Protein kinase-like (PK-like)	309	615	IPR011009	-
	Pvu6g0884	646	ProSiteProfiles	Gnk2-homologous domain profile.	138	241	IPR002902	-
	Pvu6g0884	646	Pfam	Salt stress response/antifungal	145	238	IPR002902	-
	Pvu6g0884	646	Pfam	Salt stress response/antifungal	42	130	IPR002902	-
	Pvu6g0884	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	446	458	IPR008271	GO:0004672\|GO:0006468
	Pvu6g0884	646	Coils	Coil	48	68	-	-
	Pvu6g0884	646	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Pvu6g0884	646	SMART	serkin_6	325	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu6g0884	646	Gene3D	Transferase(Phosphotransferase) domain 1	402	609	-	-
	Pvu6g0884	646	Pfam	Protein kinase domain	325	538	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu6g0884	Pvu-Chr6	20301193	20304577	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu6g0884	9	644	Receptor kinase-like Gene Family	AT1G70520	37.557	3.61e-126	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pvu6g0884		Pkinase	3e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu6g0884	-		-	gmx:100776342	1032.71