Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0882 ATGTGTACGCTGTTTTGGTCCCCAACCACCATCAACACGCACAACCTTTCTCTTTTTTTTCTTTTTATTCTCCATTCAATTCACCATCAACTTTCTAACCACTTCTTCTTCTTCTTCAAAATGCTGCTGCAACTGCATCTCAATCTCCTACCCCTAACTTTCTTCATCTTCTGGAGCCTTCAGGGTGCCCTAGGGGACCCTCAAATTCTTTTGCTGAACAAGGGGTGTAGCCAATACAACGCCACAGATTTGTCCAATTTCAACCAAAATCTAAACGCAACTTTGAATGAACTTAGAGTTCAAGTTAGCAACCAAAGCAAACACTTTGCCACCGCTCAAGAAGCTAGAGGACAAGACCCTGTCTATGCCTTGTTCCAATGTAGGAACTACCTCTCCACTGCTGACTGCGCCGCCTGCTATGACGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGGGCCAACGGTGCCCGTGTCATCTATGACGGTTGCCTCCTTAGGTATGAGAGCACTGGCTTCTTTGACCAGACCACTATGGCTGGCAACAGTATGATTTGTGGAAATCAGACAGCAGCTGATTTCAATACAACTGCACAGCAAGTTCTAAAGGATCTGCAAATTGCAACCCCCAAAATCACTGGTTTCTTTGCAGCTACCAAGACACAACTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATATAACAACATACATATTTGTTTACCCAATACAGAGGGAAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCTTTTTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTGCAACAAGGGGGTTCAAGCAAGAAGGGAGCCATTATTGGTGGGGTTGTTGGAGGTGTAGGTCTTGTGGTGATCCTCCTTGGACTAATTGTCTTGCTTAGACTGTTCAAGAAACCCAAGAGGGGTCGAAGAGATAACATATTGGGAGCAACTGAATTGAAAGGTCCAGTTTCGTTCAGGTATAAGGATTTGAAGGCTGCAACAAAAGATTTCAGTGAAGAAAATAAACTAGGACAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAAATAGTTGCAGTGAAGAAATTATCTTTAGGCCACTCAGGAAAGATCGATGAACAATTTGAAAGTGAAGTGAAGCTTATAAGCAACGTTCATCACAAGAATCTAGTTCGACTCCTTGGATGTTGCAGTAAAGGCCCAGAGAGAATCCTTGTGTATGAATACATGGCAAATAACAGCTTGGATAGATTCTTATTTGGTGAAGGAAAGGACTCCCTCAGCTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCTTATCTACATGAGGATTTCCATGTTTGCATCATACATAGGGATATAAAGGCTAGCAATATTCTCTTGGATGATGAGATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGATGACCAATCTCATCTTAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATGCCTACAGCTTTGGTGTTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAATACTGGATTGAGGGAAGATGCTAATGGTGAATTCCTCCTTCAAAGAGCATGGAAACTTTATGAGGAAGACATGCATTTGAGGTTGGCTGACAAGACATTGGATCCTGAAGAGTATGAGGTAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAAGTAGTAGCCTCACTGAAAAGCAAGAACTCAGTGGGGCAAACTAGGCCTTCTATGCCTGTATTTGTTGAATCTAACTTCAGGACTCGTGCAGCTGACACCTCTACCTCAACTGCTTCCTCTACATCTAATGCTACTGCTTCCATTTCTATCCTCTCAGCTCGATGA 2049 0.4353 MCTLFWSPTTINTHNLSLFFLFILHSIHHQLSNHFFFFFKMLLQLHLNLLPLTFFIFWSLQGALGDPQILLLNKGCSQYNATDLSNFNQNLNATLNELRVQVSNQSKHFATAQEARGQDPVYALFQCRNYLSTADCAACYDAAAAQIRNCSAGANGARVIYDGCLLRYESTGFFDQTTMAGNSMICGNQTAADFNTTAQQVLKDLQIATPKITGFFAATKTQLAGGAIYAIAQCAETVSESGCLDCLTVGYNNIHICLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGGSSKKGAIIGGVVGGVGLVVILLGLIVLLRLFKKPKRGRRDNILGATELKGPVSFRYKDLKAATKDFSEENKLGQGGFGDVYKGTLKNGKIVAVKKLSLGHSGKIDEQFESEVKLISNVHHKNLVRLLGCCSKGPERILVYEYMANNSLDRFLFGEGKDSLSWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKASNILLDDEMQPRIADFGLARLLPDDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIVSGQKNTGLREDANGEFLLQRAWKLYEEDMHLRLADKTLDPEEYEVEEVKKVIEIALLCIQASAAARPTMSEVVASLKSKNSVGQTRPSMPVFVESNFRTRAADTSTSTASSTSNATASISILSAR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0882 682 Coils Coil 88 108 - -
Pvu6g0882 682 CDD STKc_IRAK 368 634 - -
Pvu6g0882 682 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Pvu6g0882 682 ProSiteProfiles Gnk2-homologous domain profile. 174 279 IPR002902 -
Pvu6g0882 682 Pfam Protein tyrosine and serine/threonine kinase 365 633 IPR001245 GO:0004672|GO:0006468
Pvu6g0882 682 ProSiteProfiles Protein kinase domain profile. 362 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0882 682 Gene3D - 181 279 IPR038408 -
Pvu6g0882 682 Gene3D - 69 173 IPR038408 -
Pvu6g0882 682 SMART serkin_6 362 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0882 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Pvu6g0882 682 Gene3D Phosphorylase Kinase; domain 1 329 438 - -
Pvu6g0882 682 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 62 678 - -
Pvu6g0882 682 SUPERFAMILY Protein kinase-like (PK-like) 341 633 IPR011009 -
Pvu6g0882 682 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 62 678 - -
Pvu6g0882 682 Gene3D Transferase(Phosphotransferase) domain 1 439 648 - -
Pvu6g0882 682 ProSiteProfiles Gnk2-homologous domain profile. 69 173 IPR002902 -
Pvu6g0882 682 Pfam Salt stress response/antifungal 189 276 IPR002902 -
Pvu6g0882 682 Pfam Salt stress response/antifungal 76 170 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0882 Pvu-Chr6 20285387 20291785 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0882 45 682 Receptor kinase-like Gene Family AT1G70520 38.508 3.19e-130 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu6g0882 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0882 - - pvu:PHAVU_006G084400g 1251.5