Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0880 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTACACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACAGCCAGTGATACTAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCGGCTCAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATTTTTGTTAGTGCCAAGAGACTCGTGGCCGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCCACTAATAGCTGTTTTACCGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAGTCAGGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTATCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGGTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAGTTCTCCTTTGCAACTTCAGCCACAGCAATCAATTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAGGCCCATGTATTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATTCTTTTCAAGACCCGCTCTTAATTCCAAGTGATCAGCTCCCTCAGAGACAACACTCTGGTGTTCCTTCACCATCATATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCCGGACAAAACATGCTTAGTTCACTTTGTCCAGAAGGAAGTGCAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCTTTGCTCAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTATGCAGGTCAATGCTTATGGAAGCACTGTGCAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATACCCAAAATTCTACACTCTTTGGTGTCAATATCGATTCATCTGGCCTTCTTCTTCCGACCACAGTCCCTGGTTACAGTACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTATTTGGTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCGCAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCTCGGTTCAGCAGCTATCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTAAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGATTACTGA 2523 0.4554 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESGVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGSRDEASNGLMWLRGGPGDQGLNSLNFQGGGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSSSPLQLQPQQSIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSFQDPLLIPSDQLPQRQHSGVPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSANLLNLSRSGPSLLSEQLPQQQWTQKYAPMQVNAYGSTVQYSGKDSAMVLPHLNSDTQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLDY* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0880 840 ProSiteProfiles PB1 domain profile. 714 798 IPR000270 GO:0005515
Pvu6g0880 840 SMART B3_2 127 229 IPR003340 GO:0003677
Pvu6g0880 840 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Pvu6g0880 840 MobiDBLite consensus disorder prediction 819 840 - -
Pvu6g0880 840 PANTHER AUXIN RESPONSE FACTOR 1 825 - -
Pvu6g0880 840 MobiDBLite consensus disorder prediction 539 561 - -
Pvu6g0880 840 Gene3D - 125 228 IPR015300 -
Pvu6g0880 840 Gene3D - 710 803 - -
Pvu6g0880 840 MobiDBLite consensus disorder prediction 539 559 - -
Pvu6g0880 840 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pvu6g0880 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 825 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu6g0880 840 SUPERFAMILY CAD & PB1 domains 709 788 - -
Pvu6g0880 840 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pvu6g0880 840 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu6g0880 840 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pvu6g0880 840 MobiDBLite consensus disorder prediction 470 495 - -
Pvu6g0880 840 Pfam AUX/IAA family 710 798 IPR033389 -
Pvu6g0880 840 Gene3D - 291 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0880 Pvu-Chr6 20268682 20276245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0880 97 806 B3 DNA Binding Superfamily AT5G37020 67.316 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu6g0880 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0880 - - gmx:100784373 1563.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0880 6 20268682 20276245 Pvu6g0880 6 20268682 20276245 ECH
Pvu6g0880 6 20268682 20276245 Pvu8g2508 8 55661856 55672857 PCT