Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0864 ATGGTGGTTTCTCTTCCTCTCCTCCCCACCATGGAGACCATTCCCTCTGTTCTCAAGAAATACTTTGGGTTTTCTGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTGTTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGCAGTGGGAAGTCATTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATCAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTACCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTCTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTGAGGTCTTGCTTGATGTTCCTTTTGTTGGTCTAACTGCCACTGCTACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTACAGAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGATCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTTATGGTGGCAACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTTGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCGGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGTAAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTTGCTGCTGAACACTATTGTGTGCTGACCACATGCAGAAGAAAGTACTTGCTTGAATACTTTGGGGAAAAAAATTCAGCTGATAGATGCGGTAACTGTGATAATTGCAAAGTCTCAAAGGAGGAGCGTGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAGATGGGGCCTTAATATGCCTATTGATGTCCTGCGTGGGTCTCGAGTCAAGAAAATTCTAGAGGCTCAATTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCGAGGTTATTTGAAGGAGACTGTTAGTGACGTCTATAGAACTATAAGTGTCAGTTCGAAAGGAGAGCAGTTTTTGGCCTCTTCTACACCAGATTATCAACCTCCTTTGATTTTGACATTAACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATTAGAAGGTTTTTCAGAGGCTGAGAAAACGTTCCACCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAGGAAAATTTCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTTACAAAATATGGAGATCATTTTCTTCAAGTTATTCTGAAACTGTCGCAAGGATTAAACCTATCATTGGATGGGGAAGAAAAGGTTCCAATGGCTAGTTTGCAAACTAATGGAGTAACGAAAGTATCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCAAAGTTTGAAGCATGGAAAAAATGGCATGAAGATGGTCTTTCTATTCACGAGATAGCTAACTTAGAAGCTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGTTAGATTCAGCAAGATGATAGGACTGACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTCTGGTATATCCTTGGAAACATTTCAATCTGGAAGTAACCAGACTGGGAAAGATGATGAACTTGCATACAATGCTTCAAATTTTCCAGACTCTACTTTAGAAACATGTCCCGACAGACATTGTGAAGATGGCATTTCTGCAAAAAGTTTGGCTGAACAATGCGACTTGGAAATGGATGAGGTACCTTTACCTGTGAACAGTTCTGAGGAACAGAAGCTCTCAAATGCCAGTGAAGGGGAATTCACAAGAAAACGACAAAAGGTCAGTGAAACGAATGAAGAAAATTCAACTAAATTGAAAGCTACAGAGAGTTCTGTTGTGGAGTGGATGAAGAACCTTGATGAAGGGGCTACGTTGAGCACTATTTTGGAACACTTCAATGGATCCAGTGAAGATTCTGTGGTTGAACTGATAAATGGCCTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTATAGGGTTTTGTAA 2781 0.3995 MVVSLPLLPTMETIPSVLKKYFGFSDFRPYQREVIEKIVEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTSFWSNLLKAGISLLAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQIFKSFTEAGIEAGMYHGQMNGKDREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAVMESLLAAEHYCVLTTCRRKYLLEYFGEKNSADRCGNCDNCKVSKEERDMSREAFLLMACIHSCKGRWGLNMPIDVLRGSRVKKILEAQFDKLPLHGLGKNYPANWWKSLGHQLISRGYLKETVSDVYRTISVSSKGEQFLASSTPDYQPPLILTLTAEMLGEEDNGNTQEEFKTLSTSELEGFSEAEKTFHQMLLEERLELARSVGTAPYAICGDQTIRKISLTRPSTKARLANINGVNQHLVTKYGDHFLQVILKLSQGLNLSLDGEEKVPMASLQTNGVTKVSPLTNKSKKLTSAKFEAWKKWHEDGLSIHEIANLEARSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNSGISLETFQSGSNQTGKDDELAYNASNFPDSTLETCPDRHCEDGISAKSLAEQCDLEMDEVPLPVNSSEEQKLSNASEGEFTRKRQKVSETNEENSTKLKATESSVVEWMKNLDEGATLSTILEHFNGSSEDSVVELINGLECDFLIYRKGNVYRVL* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0864 926 Pfam RQC domain 413 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pvu6g0864 926 SMART ultradead3 23 218 IPR014001 -
Pvu6g0864 926 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 202 IPR014001 -
Pvu6g0864 926 SMART RQC_2 417 521 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pvu6g0864 926 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 16 468 IPR004589 GO:0004386|GO:0006310
Pvu6g0864 926 SUPERFAMILY HRDC-like 553 627 IPR010997 GO:0000166|GO:0044237
Pvu6g0864 926 Gene3D - 412 535 IPR036388 -
Pvu6g0864 926 Pfam HRDC domain 561 623 IPR002121 GO:0003676
Pvu6g0864 926 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 13 757 - -
Pvu6g0864 926 Pfam RecQ zinc-binding 355 410 IPR032284 -
Pvu6g0864 926 ProSiteProfiles HRDC domain profile. 553 633 IPR002121 GO:0003676
Pvu6g0864 926 MobiDBLite consensus disorder prediction 845 866 - -
Pvu6g0864 926 SMART helicmild6 255 336 IPR001650 -
Pvu6g0864 926 Gene3D - 7 208 IPR027417 -
Pvu6g0864 926 Gene3D HRDC domain 552 632 IPR044876 -
Pvu6g0864 926 CDD DEXHc_RecQ 16 209 - -
Pvu6g0864 926 CDD SF2_C_RecQ 210 345 - -
Pvu6g0864 926 PANTHER DNA HELICASE RECQ FAMILY MEMBER 13 757 - -
Pvu6g0864 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 350 IPR027417 -
Pvu6g0864 926 Gene3D - 210 411 IPR027417 -
Pvu6g0864 926 Pfam DEAD/DEAH box helicase 29 188 IPR011545 GO:0003676|GO:0005524
Pvu6g0864 926 SMART hrdc7 553 633 IPR002121 GO:0003676
Pvu6g0864 926 Pfam Helix-turn-helix domain 669 765 IPR029491 -
Pvu6g0864 926 Pfam Helicase conserved C-terminal domain 229 335 IPR001650 -
Pvu6g0864 926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 389 IPR001650 -
Pvu6g0864 926 MobiDBLite consensus disorder prediction 834 868 - -
Pvu6g0864 926 SUPERFAMILY "Winged helix" DNA-binding domain 408 514 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0864 Pvu-Chr6 20153667 20163591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0864 245 352 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 1.24e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0864 K03654 - gmx:100797777 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0864 6 20153667 20163591 Pvu6g0864 6 20153667 20163591 ECH