Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0843 ATGTATCTTTCAAAGAGTTTCAAGCATGAAGTTGTTGTCATCCTGTGGTTTTTCTGCTATTTGCTACATGCTGCTGGGCAGAATAACATCACTAATAGTGTTGAAGTTGAAGCATTGAAAGCCATCAAGAGTAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATCATGGGGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACACAAGAGGATGGCTTTCTGCATGTTGAAGAATTGCAATTGCTGAGTTTGCAACTGTCTGGAACCTTGGCACCAGATCTTGGCAAATTAACGTACATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGCAGTATTCCGAAGGAAGTTGGCAATATCAAATCTTTGGAACTTTTACTCCTGAATGGAAATAATTTAACAGGTCCACTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATCGATCAGAACCATATATCAGGACCTATACCTAGGTCATTTGCAAATCTGAACAAGACAAAGCATTTTCACATGAACAACAACTCACTCAGCGGGCAAATCCCACCAGAGCTTTCCCGATTACCAAAACTTGTTCACCTTCTTCTCGACAATAACAACTTATCTGGATATCTCCCCCCTGAGCTGTACAAGTTGCCAAATTTACTTATCATTCAACTTGATAACAATAATTTTGGAGGAAATAGTATTCCTGATACGTATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCCGCTTGCGAGGACCAGTTCCTGACTTAAGCAGGATACCTCGCCTTCTTTATCTCGACCTCAGTTTCAACCAGTTGAATGAATCGATTCCTCCCAATAAGCTTTCTGAAAATATTACAACCATTGATTTATCAAACAACCACCTTACTGGAAATATTCCATCCTACTTTGATGATCTTCCACGTCTTCAGAAGCTGTCACTTGCAAACAATTCATTGAATGGCAATGTTTCTTCCTCCATTTGGCTGAATAAGAATTCAAATGGATCAGAAAACTTTCTTTTGGAGTTGCAAAATAATAGCCTTACAGGCATATCAGGAAGTACTGATCTTCCTCCAAATGTCACAGTTGTGCTTGATAGGAATCCCCTTTGCTCAAACACAACCCTTGTTAAGTTCTGTGGGTCTGAAGGTGCTACTGTAACAAATGGTTCATTCACTACAAACTCCAGTTTCTGTCCTCCTCAAGGATGCCCTCCTCCTTATGAGTACTCTGTTAACTGTTTCTGTGCGCTTCCATTGCTTGTTGCTTATCGGCTGAAAAGTCCTGGATTTTCAGACTTTACTCCATATTTGAATGAATTTGAGACCTACATGACCACTGGTCTTCAATTATCTACTGATCAGCTAGAATATGATTTTTATTGGCAAGTAGGGCCTCGATTGAGAATGGACTTGAAGTTTTTCCCTCTATATGTTAATAGCACTAGCAATCATACTTTCAATAGCAGTGAGCTCCTACGGATCACAAGCATGTTCACAGGATGGTTAATTGCAGACAGTGATCTGTTTGGACCTTATGAACTGATCGGCTTCAATCTTTTGGGTCCTTACAAGGATGAAATTGGAAAGCGTTCAAAGACAGGGATAAGGACAGGTGCACTGGTTGGCATAATTGTAGGGGCAATTGCTTGTGCAGTGACATTATCTGCAATTGTTACCCTTCTTATATTGAGAATCAAATTGAGAGGTTATCATACTGTTTCCAAGCGACGTCATGCATCTAGGATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCCGCCACAAACAATTTCAGCACTTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGTGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTAATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCTAAAGAACCCCTGACTTTTGCCATGAGATTGAAGATCGCACTAGGGGCAGCTAAAGGTCTCATGTATCTGCACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTGTTGGACCCTAAGTTTTCGGCGAAAGTGGCTGATTTTGGACTTTCACGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTACTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAAAGAGGTGTAATATTTTCAATTATTGATGGACGCATGGGGTCTTATCCATCTGAGCAAGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTTGCGAAGATGAGCCAGAGGCTCGGCCTAGAATGACAGAAGTGGTTAGAGAGCTTGAAAACATATGGTATACAATGCCAGAATCAGACACAAAGAGAGCTGAATTTATATCCAGTGATTCTGGCAAAACAGACAGTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTAAGTGGAGTAATACCAAGCATCAACCCAAGATAG 2856 0.409 MYLSKSFKHEVVVILWFFCYLLHAAGQNNITNSVEVEALKAIKSSLIDPNGNLSNWNHGDPCTSRWKGVLCFNETQEDGFLHVEELQLLSLQLSGTLAPDLGKLTYMKRLNFMWNNISGSIPKEVGNIKSLELLLLNGNNLTGPLPEEIGYLPNLDRIQIDQNHISGPIPRSFANLNKTKHFHMNNNSLSGQIPPELSRLPKLVHLLLDNNNLSGYLPPELYKLPNLLIIQLDNNNFGGNSIPDTYANMSKLLKMSLRNCRLRGPVPDLSRIPRLLYLDLSFNQLNESIPPNKLSENITTIDLSNNHLTGNIPSYFDDLPRLQKLSLANNSLNGNVSSSIWLNKNSNGSENFLLELQNNSLTGISGSTDLPPNVTVVLDRNPLCSNTTLVKFCGSEGATVTNGSFTTNSSFCPPQGCPPPYEYSVNCFCALPLLVAYRLKSPGFSDFTPYLNEFETYMTTGLQLSTDQLEYDFYWQVGPRLRMDLKFFPLYVNSTSNHTFNSSELLRITSMFTGWLIADSDLFGPYELIGFNLLGPYKDEIGKRSKTGIRTGALVGIIVGAIACAVTLSAIVTLLILRIKLRGYHTVSKRRHASRISIKIDGVRAFTYGELSSATNNFSTSAQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDPKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGMHPISHGKNIVREVNIAYQRGVIFSIIDGRMGSYPSEQVEKFLTLALKCCEDEPEARPRMTEVVRELENIWYTMPESDTKRAEFISSDSGKTDSHSIPSSSSASAMKTPFVSGDVSGSDLVSGVIPSINPR* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0843 951 SUPERFAMILY L domain-like 44 393 - -
Pvu6g0843 951 MobiDBLite consensus disorder prediction 909 931 - -
Pvu6g0843 951 SUPERFAMILY Protein kinase-like (PK-like) 603 909 IPR011009 -
Pvu6g0843 951 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Pvu6g0843 951 Gene3D Ribonuclease Inhibitor 188 294 IPR032675 -
Pvu6g0843 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 921 - -
Pvu6g0843 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Pvu6g0843 951 CDD STKc_IRAK 624 890 - -
Pvu6g0843 951 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0843 951 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Pvu6g0843 951 MobiDBLite consensus disorder prediction 902 951 - -
Pvu6g0843 951 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0843 951 Pfam Protein kinase domain 619 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0843 951 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 921 - -
Pvu6g0843 951 Gene3D Ribonuclease Inhibitor 295 384 IPR032675 -
Pvu6g0843 951 Gene3D Transferase(Phosphotransferase) domain 1 694 910 - -
Pvu6g0843 951 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Pvu6g0843 951 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Pvu6g0843 951 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0843 Pvu-Chr6 19953718 19967156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0843 19 900 Receptor kinase-like Gene Family AT5G01950 58.837 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Pvu6g0843 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0843 - - gmx:100786467 1635.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0843 6 19953718 19967156 Pvu8g2541 8 56004632 56015286 PCT
Pvu8g2538 8 55970838 55973409 Pvu6g0843 6 19953718 19967156 PCT