Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0836 ATGTCGTATGTGCCTCCGCACCTCAGAAATAACAGCTCCGCCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGATAACAACAACCACCACCACCACAATAACAACCACCACAAGCTCGCATTCGCCTCCAATAACAACACCAACGCCAATTGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCGTCGCCGCGGATATTCGCCACCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCAGAACGCGCTTCGCGTATGACTCCGGAGCAGATCGAAGAGGTCCGTTCCCGGCTTAATCTTGACGTTACTGTTGCATCTGATTCTCCTCCCGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGGACTCAAGTATCATGAAGGATATTGCTTTCCATGAATACACCAGGCCAACTTCAATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACCGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTTTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCGGAACTTAGAGCCGGGGTTGAAATAGCAGTTGCCACACCTGGAAGATTCATTGATCACTTACAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGTCCAACAACTAATGTTTCGCAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGGCTTCTAGATTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTCGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAATGAAAGAGAGGCTGCCTTGCAGGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCTAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCTTAGCAACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGATGCTGAATCTGGGAACACATTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTTTCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTTATGATTGCTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA 1716 0.4674 MSYVPPHLRNNSSATVATARTPSVTLDNNNHHHHNNNHHKLAFASNNNTNANCSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLDSSIMKDIAFHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALQDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIAFSKQLGLGAASINIEDKYKFMIAAANIKREGAADSAWDD* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0836 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 515 IPR001650 -
Pvu6g0836 571 Pfam Helicase conserved C-terminal domain 357 474 IPR001650 -
Pvu6g0836 571 SMART ultradead3 145 348 IPR014001 -
Pvu6g0836 571 Gene3D - 339 533 IPR027417 -
Pvu6g0836 571 MobiDBLite consensus disorder prediction 40 69 - -
Pvu6g0836 571 Pfam DEAD/DEAH box helicase 150 320 IPR011545 GO:0003676|GO:0005524
Pvu6g0836 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 24 536 - -
Pvu6g0836 571 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Pvu6g0836 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Pvu6g0836 571 Coils Coil 212 232 - -
Pvu6g0836 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 494 IPR027417 -
Pvu6g0836 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 24 536 - -
Pvu6g0836 571 CDD DEADc 137 334 - -
Pvu6g0836 571 MobiDBLite consensus disorder prediction 24 96 - -
Pvu6g0836 571 SMART helicmild6 393 474 IPR001650 -
Pvu6g0836 571 Gene3D - 86 337 IPR027417 -
Pvu6g0836 571 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Pvu6g0836 571 CDD SF2_C_DEAD 345 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0836 Pvu-Chr6 19863477 19872009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0836 126 496 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 3.97e-69 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0836 K12823 - gmx:100818387 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0836 6 19863477 19872009 Pvu6g0836 6 19863477 19872009 ECH